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The map label for this gene is slmA

Identifier: 126209421

GI number: 126209421

Start: 2195478

End: 2196086

Strand: Reverse

Name: slmA

Synonym: APL_1967

Alternate gene names: 126209421

Gene position: 2196086-2195478 (Counterclockwise)

Preceding gene: 126209422

Following gene: 126209420

Centisome position: 96.55

GC content: 41.38

Gene sequence:

>609_bases
ATGATACAACCCACAGTTAAGATGCCTAAAAAATCGGTAAAAGAACGCCAACAGCAAGTCCTTGAAGTGCTGATTGGCTT
ATTAAATTCCGAAGACGGTATGCAACGTGTAACCACCGAGCGTTTAGCCAAAGCGGTCGGCGTTTCGGAAGGTGCGCTTT
ACCGTTATTTTCCAAGCAAAACGAAGATGTTTGAGGCATTAATTGAGCGTATCGAACAGACCTTAACCGGTTATATTAAC
GCCAGTAAACGCAAAGAAAATACCACGGCATCCACCGTTAAAGCGATTCTCTACACCGTGATCGAATTCGCCCGCAAAAA
TCCGGGAGTAACTCGCATTCTAACCGGTCATGCGCTGATGTTTGAAGACGATCAATTAAAAGCACGTGTTGCCAAATTTT
TTGACGGCTTAGAATTTCAGTTCGCCAATATTTTACAGATGAGTAAATTGCGTGAAGGTAAAACGTTCGAGGACGAACGT
GCATTGGCAGGCTATTTAGTGAATTTTTGCGAAGGTCAATTTTTACGTTTAGTACGTTCTAACTTCAGTTACAACCAACA
TCAACATTTTGAAAAACAATGGGCATTAATTAAGCCGTTATTTGAGTAA

Upstream 100 bases:

>100_bases
GCTACTCAAGCAAGCGGTCGAATTTGTAAAAAATTTTGCAAAAATGACCGCTTGCGACTTCTTTTGATAATAAGCAGATT
GGCAAAACAAAGAGAAATTT

Downstream 100 bases:

>100_bases
GTTTTATGATTATTCCGTGGCAAGAACTTGAACCCGCAACATTAAATAATGTATTGGATTCATTTATTTTACGAGAAGGC
ACCGATTACGGCGAAAGAGA

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MIQPTVKMPKKSVKERQQQVLEVLIGLLNSEDGMQRVTTERLAKAVGVSEGALYRYFPSKTKMFEALIERIEQTLTGYIN
ASKRKENTTASTVKAILYTVIEFARKNPGVTRILTGHALMFEDDQLKARVAKFFDGLEFQFANILQMSKLREGKTFEDER
ALAGYLVNFCEGQFLRLVRSNFSYNQHQHFEKQWALIKPLFE

Sequences:

>Translated_202_residues
MIQPTVKMPKKSVKERQQQVLEVLIGLLNSEDGMQRVTTERLAKAVGVSEGALYRYFPSKTKMFEALIERIEQTLTGYIN
ASKRKENTTASTVKAILYTVIEFARKNPGVTRILTGHALMFEDDQLKARVAKFFDGLEFQFANILQMSKLREGKTFEDER
ALAGYLVNFCEGQFLRLVRSNFSYNQHQHFEKQWALIKPLFE
>Mature_202_residues
MIQPTVKMPKKSVKERQQQVLEVLIGLLNSEDGMQRVTTERLAKAVGVSEGALYRYFPSKTKMFEALIERIEQTLTGYIN
ASKRKENTTASTVKAILYTVIEFARKNPGVTRILTGHALMFEDDQLKARVAKFFDGLEFQFANILQMSKLREGKTFEDER
ALAGYLVNFCEGQFLRLVRSNFSYNQHQHFEKQWALIKPLFE

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87082302, Length=185, Percent_Identity=45.4054054054054, Blast_Score=169, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SLMA_ACTP2 (A3N3Q5)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001054646.1
- ProteinModelPortal:   A3N3Q5
- STRING:   A3N3Q5
- GeneID:   4849969
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_1967
- eggNOG:   COG1309
- HOGENOM:   HBG297015
- OMA:   RSEFRYR
- PhylomeDB:   A3N3Q5
- ProtClustDB:   PRK09480
- BioCyc:   APLE416269:APL_1967-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_01839
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 23307; Mature: 23307

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQPTVKMPKKSVKERQQQVLEVLIGLLNSEDGMQRVTTERLAKAVGVSEGALYRYFPSK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCH
TKMFEALIERIEQTLTGYINASKRKENTTASTVKAILYTVIEFARKNPGVTRILTGHALM
HHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEE
FEDDQLKARVAKFFDGLEFQFANILQMSKLREGKTFEDERALAGYLVNFCEGQFLRLVRS
ECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NFSYNQHQHFEKQWALIKPLFE
CCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIQPTVKMPKKSVKERQQQVLEVLIGLLNSEDGMQRVTTERLAKAVGVSEGALYRYFPSK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCH
TKMFEALIERIEQTLTGYINASKRKENTTASTVKAILYTVIEFARKNPGVTRILTGHALM
HHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEE
FEDDQLKARVAKFFDGLEFQFANILQMSKLREGKTFEDERALAGYLVNFCEGQFLRLVRS
ECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NFSYNQHQHFEKQWALIKPLFE
CCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA