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The map label for this gene is yedY

Identifier: 126209294

GI number: 126209294

Start: 2055320

End: 2056276

Strand: Direct

Name: yedY

Synonym: APL_1832

Alternate gene names: 126209294

Gene position: 2055320-2056276 (Clockwise)

Preceding gene: 126209292

Following gene: 126209295

Centisome position: 90.36

GC content: 43.89

Gene sequence:

>957_bases
ATGAACAGATTTACTCGTTATGACGTTACCCCTGAAGCTATTTTCAATCAACGTCGTCAAATTATTAAGGCTATGGGACT
CGGTGCGGCGGCTCTGAGTTTACCGAATATCGGCTTTGCCGCAGAGAAATCCGACCAGTTAAAAGCACTTAATTTTAAAG
ACGCTCCGAAGGGTGATTTCTTACTCACTCCGGAAAATAAAGTCACCGGCTATAACAATTTCTATGAATTCGGCGTAGAT
AAAGCATCCCCCGCTAAATTTGCAAAAGATTTTAAAACGGATCCGTGGTCGTTGGAAATTGCCGGTGAGGTAGAGAATCC
TTTTGTGCTTAATCACGCACAATTATTCAATACTTTTCCGTTAGAGGAGCGTATTTATCGCTTCCGTTGTGTCGAAGCAT
GGTCGATGGTAATTCCATGGGTCGGTTTTGAGTTGGCTCGTTTGGTCGAAATGGCGAAGCCTACTTCTAAAGCGAAGTTT
GTTATATTCCATACGTTACATGATCCGGAGCAAATGCCGGGGCAGAAAAATAAATTCTTCGGCGGCGGTATCGATTATCC
GTATGTAGAGGCATTAACCATCGAAGAAGCAATGAATCCGCTTACCTTACTGTCGGTCGGTCTATACGGAAAAATGCTAC
CGCCGCAAAACGGTGCGCCGATTCGTTTGGTAGTACCGTGGAAATACGGCTTCAAAAGTATTAAGTCCATTGTGAAAATT
ACTTTCTCGGAAACTCGCCCTCGTACCACTTGGGAAAAATTGGCTCCGCATGAATACGGTTTTTACGCTAATGTGAATCC
TAACGTGGATCATCCTCGTTGGTCACAGGCATCCGAACGTGTTATCGGTAGCGGCGGATTACTTGCGGTAAAACGTCAAG
ATACATTGATGTTTAACGGCTATGAGAAGGAAGTCGCTCACCTTTATAAAGGTCTGGACTTAAAGGTAAACTTCTAA

Upstream 100 bases:

>100_bases
AATCTCTGACATTATTTTTCCTTTATCTTAAATAAATTTATTTTTATGTAATTATTTTTATATTTCTAAGTCAAAGGATT
ATACATTAAAGGAGATGATT

Downstream 100 bases:

>100_bases
TGTTATCTATATTAAGAACAATTATTCATTTGGCTTGTGTTGTGCCGTTGGTTTGGGTCGGCTTCGTTTTATCCAGCGAC
GACCCGGAAATACTCGGAGC

Product: putative sulfite oxidase subunit YedY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MNRFTRYDVTPEAIFNQRRQIIKAMGLGAAALSLPNIGFAAEKSDQLKALNFKDAPKGDFLLTPENKVTGYNNFYEFGVD
KASPAKFAKDFKTDPWSLEIAGEVENPFVLNHAQLFNTFPLEERIYRFRCVEAWSMVIPWVGFELARLVEMAKPTSKAKF
VIFHTLHDPEQMPGQKNKFFGGGIDYPYVEALTIEEAMNPLTLLSVGLYGKMLPPQNGAPIRLVVPWKYGFKSIKSIVKI
TFSETRPRTTWEKLAPHEYGFYANVNPNVDHPRWSQASERVIGSGGLLAVKRQDTLMFNGYEKEVAHLYKGLDLKVNF

Sequences:

>Translated_318_residues
MNRFTRYDVTPEAIFNQRRQIIKAMGLGAAALSLPNIGFAAEKSDQLKALNFKDAPKGDFLLTPENKVTGYNNFYEFGVD
KASPAKFAKDFKTDPWSLEIAGEVENPFVLNHAQLFNTFPLEERIYRFRCVEAWSMVIPWVGFELARLVEMAKPTSKAKF
VIFHTLHDPEQMPGQKNKFFGGGIDYPYVEALTIEEAMNPLTLLSVGLYGKMLPPQNGAPIRLVVPWKYGFKSIKSIVKI
TFSETRPRTTWEKLAPHEYGFYANVNPNVDHPRWSQASERVIGSGGLLAVKRQDTLMFNGYEKEVAHLYKGLDLKVNF
>Mature_318_residues
MNRFTRYDVTPEAIFNQRRQIIKAMGLGAAALSLPNIGFAAEKSDQLKALNFKDAPKGDFLLTPENKVTGYNNFYEFGVD
KASPAKFAKDFKTDPWSLEIAGEVENPFVLNHAQLFNTFPLEERIYRFRCVEAWSMVIPWVGFELARLVEMAKPTSKAKF
VIFHTLHDPEQMPGQKNKFFGGGIDYPYVEALTIEEAMNPLTLLSVGLYGKMLPPQNGAPIRLVVPWKYGFKSIKSIVKI
TFSETRPRTTWEKLAPHEYGFYANVNPNVDHPRWSQASERVIGSGGLLAVKRQDTLMFNGYEKEVAHLYKGLDLKVNF

Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase

COG id: COG2041

COG function: function code R; Sulfite oxidase and related enzymes

Gene ontology:

Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedY family

Homologues:

Organism=Escherichia coli, GI1788282, Length=335, Percent_Identity=59.7014925373134, Blast_Score=407, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YEDY_ACTP2 (A3N3C8)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001054519.1
- ProteinModelPortal:   A3N3C8
- SMR:   A3N3C8
- STRING:   A3N3C8
- GeneID:   4850019
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_1832
- eggNOG:   COG2041
- HOGENOM:   HBG287041
- OMA:   HYNNFYE
- PhylomeDB:   A3N3C8
- ProtClustDB:   PRK05363
- BioCyc:   APLE416269:APL_1832-MONOMER
- HAMAP:   MF_01206
- InterPro:   IPR000572
- InterPro:   IPR022867
- Gene3D:   G3DSA:3.90.420.10

Pfam domain/function: PF00174 Oxidored_molyb; SSF56524 Oxidored_molyb

EC number: NA

Molecular weight: Translated: 36110; Mature: 36110

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS51318 TAT

Important sites: BINDING 72-72 BINDING 165-165 BINDING 217-217 BINDING 222-222

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFTRYDVTPEAIFNQRRQIIKAMGLGAAALSLPNIGFAAEKSDQLKALNFKDAPKGDF
CCCCEECCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCE
LLTPENKVTGYNNFYEFGVDKASPAKFAKDFKTDPWSLEIAGEVENPFVLNHAQLFNTFP
EECCCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCCCEEEEHHHHHHCCC
LEERIYRFRCVEAWSMVIPWVGFELARLVEMAKPTSKAKFVIFHTLHDPEQMPGQKNKFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHCCCCCCCCC
GGGIDYPYVEALTIEEAMNPLTLLSVGLYGKMLPPQNGAPIRLVVPWKYGFKSIKSIVKI
CCCCCCCHHHEEEHHHHCCCHHEEEHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHEE
TFSETRPRTTWEKLAPHEYGFYANVNPNVDHPRWSQASERVIGSGGLLAVKRQDTLMFNG
EECCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHEECCCCEEEEEECCEEEECC
YEKEVAHLYKGLDLKVNF
HHHHHHHHHCCCCEEEEC
>Mature Secondary Structure
MNRFTRYDVTPEAIFNQRRQIIKAMGLGAAALSLPNIGFAAEKSDQLKALNFKDAPKGDF
CCCCEECCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCE
LLTPENKVTGYNNFYEFGVDKASPAKFAKDFKTDPWSLEIAGEVENPFVLNHAQLFNTFP
EECCCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCCCEEEEHHHHHHCCC
LEERIYRFRCVEAWSMVIPWVGFELARLVEMAKPTSKAKFVIFHTLHDPEQMPGQKNKFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHCCCCCCCCC
GGGIDYPYVEALTIEEAMNPLTLLSVGLYGKMLPPQNGAPIRLVVPWKYGFKSIKSIVKI
CCCCCCCHHHEEEHHHHCCCHHEEEHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHEE
TFSETRPRTTWEKLAPHEYGFYANVNPNVDHPRWSQASERVIGSGGLLAVKRQDTLMFNG
EECCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHEECCCCEEEEEECCEEEECC
YEKEVAHLYKGLDLKVNF
HHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA