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The map label for this gene is yecS [H]

Identifier: 126209155

GI number: 126209155

Start: 1922228

End: 1922887

Strand: Direct

Name: yecS [H]

Synonym: APL_1691

Alternate gene names: 126209155

Gene position: 1922228-1922887 (Clockwise)

Preceding gene: 126209154

Following gene: 126209156

Centisome position: 84.51

GC content: 41.36

Gene sequence:

>660_bases
ATGAATTGGTCTTATGTTATTAATGCGATTCCACGCTTTATTGACGCGGCAATCATTACCCTCCAGCTTTCATTTTGGGG
GATTTTGCTGTCGTTGATCTTCGGCTTATTGATTGCCGTTATTACCGCTTATCAAGTTAAACCGTTTAACCGGCTAGCTC
GCGGTTATATTGAATTATCCCGTAATACTCCTCTGCTCATTCAACTGTTCTTTCTTTATTACGGCTTGCCGAAAATCGGT
ATTAAATGGGATGGTTTTACTTGCGGTATTATTGCGTTAGTTTTTCTTGGCGCAAGCTATATGGCGGAAGCGTTACGTGC
CGGCTTACTTGCCGTGCCGAAAGGACAAACTGAAGCGGCAAAAGCGATTGGTCTAAACCGTTTTCAAGTGTTTCGTTATG
TCATTTTTCCGCAAGCATGGGCGGTATCCATTCCGGCTATCGGTGCAAATGTACTGTTTTTAATTAAAGAAACATCGGTC
ATCAGTGCGGTTGCTGTGGCAGAATTAATGTTTGTAACCAAAGATATTATCGGTATGGATTACAAAACTAATGAGGCCTT
GTTCTTATTATTCGCCAGCTATTTAGTAATTTTATTGCCGATTTCATTGTTGGCTCGCCACTTTGAAAATAAGGCTCGGA
GTGCAAAATATGGGGTTTGA

Upstream 100 bases:

>100_bases
TAAAAAATAGCTTCTTATACTTTCCTTTTCCGATTAATTAGATCAACAATTCTTCCTAGTTTTTTTAAGCGTTTTGTCTT
AACTGCACCTACTACTTGCT

Downstream 100 bases:

>100_bases
TTGGTTATTTGAGGGGCAAAATGCAGCAAGACTCTCTCAAGGTTTATGGCTAACTGCCCAGATTTCATTTATTTCGGTCG
GTTTCTCCTTGGTATTCGGT

Product: putative ABC transporter, permease protein, amino acid

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MNWSYVINAIPRFIDAAIITLQLSFWGILLSLIFGLLIAVITAYQVKPFNRLARGYIELSRNTPLLIQLFFLYYGLPKIG
IKWDGFTCGIIALVFLGASYMAEALRAGLLAVPKGQTEAAKAIGLNRFQVFRYVIFPQAWAVSIPAIGANVLFLIKETSV
ISAVAVAELMFVTKDIIGMDYKTNEALFLLFASYLVILLPISLLARHFENKARSAKYGV

Sequences:

>Translated_219_residues
MNWSYVINAIPRFIDAAIITLQLSFWGILLSLIFGLLIAVITAYQVKPFNRLARGYIELSRNTPLLIQLFFLYYGLPKIG
IKWDGFTCGIIALVFLGASYMAEALRAGLLAVPKGQTEAAKAIGLNRFQVFRYVIFPQAWAVSIPAIGANVLFLIKETSV
ISAVAVAELMFVTKDIIGMDYKTNEALFLLFASYLVILLPISLLARHFENKARSAKYGV
>Mature_219_residues
MNWSYVINAIPRFIDAAIITLQLSFWGILLSLIFGLLIAVITAYQVKPFNRLARGYIELSRNTPLLIQLFFLYYGLPKIG
IKWDGFTCGIIALVFLGASYMAEALRAGLLAVPKGQTEAAKAIGLNRFQVFRYVIFPQAWAVSIPAIGANVLFLIKETSV
ISAVAVAELMFVTKDIIGMDYKTNEALFLLFASYLVILLPISLLARHFENKARSAKYGV

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=209, Percent_Identity=36.8421052631579, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI1787030, Length=214, Percent_Identity=32.2429906542056, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1786873, Length=224, Percent_Identity=26.7857142857143, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788646, Length=172, Percent_Identity=31.9767441860465, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787087, Length=228, Percent_Identity=28.5087719298246, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786874, Length=208, Percent_Identity=25, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787086, Length=217, Percent_Identity=25.8064516129032, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788645, Length=218, Percent_Identity=26.1467889908257, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI48994930, Length=160, Percent_Identity=30.625, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082239, Length=146, Percent_Identity=30.8219178082192, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24333; Mature: 24333

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWSYVINAIPRFIDAAIITLQLSFWGILLSLIFGLLIAVITAYQVKPFNRLARGYIELS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
RNTPLLIQLFFLYYGLPKIGIKWDGFTCGIIALVFLGASYMAEALRAGLLAVPKGQTEAA
CCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHH
KAIGLNRFQVFRYVIFPQAWAVSIPAIGANVLFLIKETSVISAVAVAELMFVTKDIIGMD
HHHCCHHHHHHHHHHCCCHHHEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCC
YKTNEALFLLFASYLVILLPISLLARHFENKARSAKYGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNWSYVINAIPRFIDAAIITLQLSFWGILLSLIFGLLIAVITAYQVKPFNRLARGYIELS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
RNTPLLIQLFFLYYGLPKIGIKWDGFTCGIIALVFLGASYMAEALRAGLLAVPKGQTEAA
CCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHH
KAIGLNRFQVFRYVIFPQAWAVSIPAIGANVLFLIKETSVISAVAVAELMFVTKDIIGMD
HHHCCHHHHHHHHHHCCCHHHEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCC
YKTNEALFLLFASYLVILLPISLLARHFENKARSAKYGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]