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The map label for this gene is rlpA [C]

Identifier: 126209061

GI number: 126209061

Start: 1824026

End: 1824589

Strand: Reverse

Name: rlpA [C]

Synonym: APL_1597

Alternate gene names: 126209061

Gene position: 1824589-1824026 (Counterclockwise)

Preceding gene: 126209062

Following gene: 126209060

Centisome position: 80.22

GC content: 42.02

Gene sequence:

>564_bases
ATGCGATTAAGTAAAATGGTAACCCTGTTGTTAGCTGGATTCTTAACATTCGGATCATTGAATTCTGTTGCAGCAACCAA
AAACGCAAAACCTAGCGCAGTAAAGAAGTATCTTATTGCTAAAACTGCAAAAAAATCAGTAAAAAGCGCTGCTTTAACAG
CGAAAGCGAGAGCGAATAAAATCGCATTAGTTAAAAAAAGATCGCTTAAAGAACAACATAAACATACTACTCGTAGCCAC
TATCAGTCTGGTGTTGCAAGTTACTATGCAGATAAATTTAACGGACGCCGTACCGCAAACGGCGAAAGATTTAGCAATTC
GGCAATGACCGCGGCACACAAAACGTTACCTTTCGGTACTTTAGTCGAAGTAACCAATACCCGTAATGGTCGTTCGGTTG
TCGTTCGCGTAAACGATCGCGGACCTTATGCGCATGCCCGTGTAGTGGATTTATCGAAAGCCGCAGCACGTCAATTGGGT
ATGTACAGTTCCGGTACGGCACACGTGAAATTAGCCGTGCTAAATAAAAAAGCTACTTCTGTAGCGAGCGAAGAAGATAT
TTAA

Upstream 100 bases:

>100_bases
GTTATCTATCAAAAGAAAGATTAACAGCCACCACAAGACAATCCTGTTTTGTGGGCAAAACACATCGTTACACAGTACGA
TATCTAAATGAGGAAAACTT

Downstream 100 bases:

>100_bases
ATATTTTATATCTCGCATCAGGGTTTGTTGAGTTTCAACAAGCCCTTGTTTGCTTTATATCACCTGTTGTTTCCCCCAAA
GAATTGGATGCTTTTATGAA

Product: rare lipoprotein A RlpA-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MRLSKMVTLLLAGFLTFGSLNSVAATKNAKPSAVKKYLIAKTAKKSVKSAALTAKARANKIALVKKRSLKEQHKHTTRSH
YQSGVASYYADKFNGRRTANGERFSNSAMTAAHKTLPFGTLVEVTNTRNGRSVVVRVNDRGPYAHARVVDLSKAAARQLG
MYSSGTAHVKLAVLNKKATSVASEEDI

Sequences:

>Translated_187_residues
MRLSKMVTLLLAGFLTFGSLNSVAATKNAKPSAVKKYLIAKTAKKSVKSAALTAKARANKIALVKKRSLKEQHKHTTRSH
YQSGVASYYADKFNGRRTANGERFSNSAMTAAHKTLPFGTLVEVTNTRNGRSVVVRVNDRGPYAHARVVDLSKAAARQLG
MYSSGTAHVKLAVLNKKATSVASEEDI
>Mature_187_residues
MRLSKMVTLLLAGFLTFGSLNSVAATKNAKPSAVKKYLIAKTAKKSVKSAALTAKARANKIALVKKRSLKEQHKHTTRSH
YQSGVASYYADKFNGRRTANGERFSNSAMTAAHKTLPFGTLVEVTNTRNGRSVVVRVNDRGPYAHARVVDLSKAAARQLG
MYSSGTAHVKLAVLNKKATSVASEEDI

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=78, Percent_Identity=48.7179487179487, Blast_Score=83, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 20206; Mature: 20206

Theoretical pI: Translated: 11.45; Mature: 11.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSKMVTLLLAGFLTFGSLNSVAATKNAKPSAVKKYLIAKTAKKSVKSAALTAKARANK
CCHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IALVKKRSLKEQHKHTTRSHYQSGVASYYADKFNGRRTANGERFSNSAMTAAHKTLPFGT
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHCCCCCC
LVEVTNTRNGRSVVVRVNDRGPYAHARVVDLSKAAARQLGMYSSGTAHVKLAVLNKKATS
EEEEECCCCCCEEEEEECCCCCCCHHHEEHHHHHHHHHHCCCCCCCCEEEEEEECCHHHH
VASEEDI
CCCCCCC
>Mature Secondary Structure
MRLSKMVTLLLAGFLTFGSLNSVAATKNAKPSAVKKYLIAKTAKKSVKSAALTAKARANK
CCHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IALVKKRSLKEQHKHTTRSHYQSGVASYYADKFNGRRTANGERFSNSAMTAAHKTLPFGT
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHCCCCCC
LVEVTNTRNGRSVVVRVNDRGPYAHARVVDLSKAAARQLGMYSSGTAHVKLAVLNKKATS
EEEEECCCCCCEEEEEECCCCCCCHHHEEHHHHHHHHHHCCCCCCCCEEEEEEECCHHHH
VASEEDI
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]