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The map label for this gene is exbD [H]

Identifier: 126209033

GI number: 126209033

Start: 1797580

End: 1797990

Strand: Reverse

Name: exbD [H]

Synonym: APL_1569

Alternate gene names: 126209033

Gene position: 1797990-1797580 (Counterclockwise)

Preceding gene: 126209034

Following gene: 126209032

Centisome position: 79.05

GC content: 33.33

Gene sequence:

>411_bases
ATGGCATTTGGAAGTTTTGATAAAAATGAAAATTCGGTAATGTCAGAAATTAATGTTACGCCATTAGTTGATGTAATGTT
GGTGTTATTAATTGTTTTTATGATCACAATGCCAATATTAACCCAATCTATTCCACTTGAATTACCAACCTCCAGTATTG
AGAAAAAAGATGAGCCAAAAGATATCTTCAGAGTGGCGATTAATCCTACGGGCATTTATTTAGGCGAGAAGCTAGTGAAT
GAAGAAGAATTAAAACAATCTTTTCTGACAAAATTTCAGGAAAATAAAAATACCGTTATTGCTATTTCTGCGGATATTTC
CGTGGAATATCAACATATCGTGAAAGTCCTTGAATTAGCTCAAAACGTCGGGCTAACGAAAATAGGCTTTGTGACTCAAC
CTAGTAAATAA

Upstream 100 bases:

>100_bases
ACTTAATTGCTCGCCTTAACCGTAATCTTTCTCAAGATTTAGATCATTACGCAAACGAGTTATTTATCTATTTATTACAT
CACTATGGAGAAAATAAATA

Downstream 100 bases:

>100_bases
AAGCAGAAATTTTATATTGGAGGCAATATGCATTTTAAATCCGACCTATATATAGTAGCTCTTACCTCAACTTTCCTTGT
AGCTTGTTCTGGTGGAAAAG

Product: biopolymer transport ExbD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MAFGSFDKNENSVMSEINVTPLVDVMLVLLIVFMITMPILTQSIPLELPTSSIEKKDEPKDIFRVAINPTGIYLGEKLVN
EEELKQSFLTKFQENKNTVIAISADISVEYQHIVKVLELAQNVGLTKIGFVTQPSK

Sequences:

>Translated_136_residues
MAFGSFDKNENSVMSEINVTPLVDVMLVLLIVFMITMPILTQSIPLELPTSSIEKKDEPKDIFRVAINPTGIYLGEKLVN
EEELKQSFLTKFQENKNTVIAISADISVEYQHIVKVLELAQNVGLTKIGFVTQPSK
>Mature_135_residues
AFGSFDKNENSVMSEINVTPLVDVMLVLLIVFMITMPILTQSIPLELPTSSIEKKDEPKDIFRVAINPTGIYLGEKLVNE
EELKQSFLTKFQENKNTVIAISADISVEYQHIVKVLELAQNVGLTKIGFVTQPSK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=126, Percent_Identity=32.5396825396825, Blast_Score=76, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15198; Mature: 15067

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGSFDKNENSVMSEINVTPLVDVMLVLLIVFMITMPILTQSIPLELPTSSIEKKDEPK
CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
DIFRVAINPTGIYLGEKLVNEEELKQSFLTKFQENKNTVIAISADISVEYQHIVKVLELA
HHEEEECCCCCEEHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH
QNVGLTKIGFVTQPSK
HHCCCEEECCEECCCC
>Mature Secondary Structure 
AFGSFDKNENSVMSEINVTPLVDVMLVLLIVFMITMPILTQSIPLELPTSSIEKKDEPK
CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
DIFRVAINPTGIYLGEKLVNEEELKQSFLTKFQENKNTVIAISADISVEYQHIVKVLELA
HHEEEECCCCCEEHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH
QNVGLTKIGFVTQPSK
HHCCCEEECCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]