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The map label for this gene is napC [H]

Identifier: 126208889

GI number: 126208889

Start: 1631007

End: 1631621

Strand: Reverse

Name: napC [H]

Synonym: APL_1425

Alternate gene names: 126208889

Gene position: 1631621-1631007 (Counterclockwise)

Preceding gene: 126208890

Following gene: 126208885

Centisome position: 71.74

GC content: 40.81

Gene sequence:

>615_bases
ATGATTAAGAAATTTTGGAACTGGTTCCGTACACCGAGTAAAATGGCGGCAGGTACGCTTATTCTCATTTCTGCGATTGG
CGGTATTTTAGCGTGGGGCGGTTTTAATAAAGGTTTAGAACATACCAATACCGAACAATTCTGTTCGGACTGTCATATGA
ATGACGTTGTACCCGAATATCGTGCTTCGGCTCACTATTCAAACCGTAGCGGGGTGAAAGCGATTTGTTCGGACTGTCAC
GTACCTCATGAGTTCATTGATAAATGGAAACGTAAAATTATCGCTTCAAAAGAAGTTTACGCACACTTTACCGGTAAAGT
GGATACGAAAGAAAAATTTGAAGCGCATCGTTTAGAAATGGCGGAACGCGAGTGGGCGCGTATGAAAGCTAACGATTCTC
AAGAGTGCCGTAACTGTCATAACTTTGAAGATATGGATTTCACTCAACAGAAAACCGTAGCACAACAAATGCACGCAATG
GCGCAAGATCAGGGTAAAACTTGTATCGATTGTCACAAAGGTATCGCACACAATCTTCCTCATATGGAAAAAGTACAAAA
AACCTTTATTCCTGAAGATATGATTCAGAAAGAACAAAAAACCGAAGCTAAATAG

Upstream 100 bases:

>100_bases
TCTGTTTACAATGCCACGTACAACAAACGGATGTAAATCCGATTATTCAAAATAAATTTGAAACGATTCGTCAAATGCAA
GGTAAATAAGGAGCGACATA

Downstream 100 bases:

>100_bases
TTTAAAAACTAAGTCGGAATAACAAGTTAAGGATCGAGTTTAAGATATATAAAACTCGGTCCTTTTTTATTGGCGATTAA
AAGATAATTTTACTCGAAGC

Product: cytochrome c-type protein NapC

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MIKKFWNWFRTPSKMAAGTLILISAIGGILAWGGFNKGLEHTNTEQFCSDCHMNDVVPEYRASAHYSNRSGVKAICSDCH
VPHEFIDKWKRKIIASKEVYAHFTGKVDTKEKFEAHRLEMAEREWARMKANDSQECRNCHNFEDMDFTQQKTVAQQMHAM
AQDQGKTCIDCHKGIAHNLPHMEKVQKTFIPEDMIQKEQKTEAK

Sequences:

>Translated_204_residues
MIKKFWNWFRTPSKMAAGTLILISAIGGILAWGGFNKGLEHTNTEQFCSDCHMNDVVPEYRASAHYSNRSGVKAICSDCH
VPHEFIDKWKRKIIASKEVYAHFTGKVDTKEKFEAHRLEMAEREWARMKANDSQECRNCHNFEDMDFTQQKTVAQQMHAM
AQDQGKTCIDCHKGIAHNLPHMEKVQKTFIPEDMIQKEQKTEAK
>Mature_204_residues
MIKKFWNWFRTPSKMAAGTLILISAIGGILAWGGFNKGLEHTNTEQFCSDCHMNDVVPEYRASAHYSNRSGVKAICSDCH
VPHEFIDKWKRKIIASKEVYAHFTGKVDTKEKFEAHRLEMAEREWARMKANDSQECRNCHNFEDMDFTQQKTVAQQMHAM
AQDQGKTCIDCHKGIAHNLPHMEKVQKTFIPEDMIQKEQKTEAK

Specific function: Mediates electron flow from quinones to the NapAB complex [H]

COG id: COG3005

COG function: function code C; Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788530, Length=191, Percent_Identity=61.2565445026178, Blast_Score=254, Evalue=2e-69,
Organism=Escherichia coli, GI1787230, Length=185, Percent_Identity=46.4864864864865, Blast_Score=164, Evalue=4e-42,
Organism=Escherichia coli, GI1788181, Length=149, Percent_Identity=47.6510067114094, Blast_Score=148, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011031
- InterPro:   IPR005126
- InterPro:   IPR011885 [H]

Pfam domain/function: PF03264 Cytochrom_NNT [H]

EC number: NA

Molecular weight: Translated: 23577; Mature: 23577

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKFWNWFRTPSKMAAGTLILISAIGGILAWGGFNKGLEHTNTEQFCSDCHMNDVVPEY
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHCCHHH
RASAHYSNRSGVKAICSDCHVPHEFIDKWKRKIIASKEVYAHFTGKVDTKEKFEAHRLEM
HHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AEREWARMKANDSQECRNCHNFEDMDFTQQKTVAQQMHAMAQDQGKTCIDCHKGIAHNLP
HHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
HMEKVQKTFIPEDMIQKEQKTEAK
HHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MIKKFWNWFRTPSKMAAGTLILISAIGGILAWGGFNKGLEHTNTEQFCSDCHMNDVVPEY
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHCCHHH
RASAHYSNRSGVKAICSDCHVPHEFIDKWKRKIIASKEVYAHFTGKVDTKEKFEAHRLEM
HHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AEREWARMKANDSQECRNCHNFEDMDFTQQKTVAQQMHAMAQDQGKTCIDCHKGIAHNLP
HHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
HMEKVQKTFIPEDMIQKEQKTEAK
HHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]