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The map label for this gene is ybdB [C]

Identifier: 126208887

GI number: 126208887

Start: 1628515

End: 1628940

Strand: Direct

Name: ybdB [C]

Synonym: APL_1423

Alternate gene names: 126208887

Gene position: 1628515-1628940 (Clockwise)

Preceding gene: 126208886

Following gene: 126208888

Centisome position: 71.6

GC content: 46.71

Gene sequence:

>426_bases
ATGACGATTTGGAAGCAAACAGCAACTTGTGAACAATTAAACGCACTTAGCCAAAAATCGGCGGTAGCACACTTAGGTAT
CGAATTTACCGCAATCGGGGAAGATTGGATTGAAGCACAACTTATGGTGGACGAGCGTACCCAGCAGCCATTCGGCGTAT
TGCACGGCGGTGTATCAGCTGCTTTAGCGGAAACCACAGCCAATGCCGGTGCGTTAATGGTATGTGAAGCGCATCAAATT
GCGGTCGGAATGGAACTGAATATCAGCCATTTAAAATCGGTGCCGGCCGGTACAAAAGCGATTGCCTGTGCCAATCCGCT
GAAATTAGGGCGAGAAGTTCAAGTGTGGAATATTGATATTAAAGACGAACAAGGCAACCTTTGTGCCGTGGCTCGTCTTT
CAACCAAAACCTTAGATAAACGTTAA

Upstream 100 bases:

>100_bases
TTACTAAAGAGGGGGATTAATATTGAAGGGCAAAGAGAGTACGACCTTTCATTCTTTTACGAAGAAAGATTGAGAGGAAT
TTATAACAAAAGGAAACATA

Downstream 100 bases:

>100_bases
TATCCTATCCTGCAAGCGGTCGAATTTGGTCAAGTTTTGCAAAATTCTTGCTAAATCCGACCGCTATTCGCAAAAAAAGG
CGGTTGGATCTAGTGCCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MTIWKQTATCEQLNALSQKSAVAHLGIEFTAIGEDWIEAQLMVDERTQQPFGVLHGGVSAALAETTANAGALMVCEAHQI
AVGMELNISHLKSVPAGTKAIACANPLKLGREVQVWNIDIKDEQGNLCAVARLSTKTLDKR

Sequences:

>Translated_141_residues
MTIWKQTATCEQLNALSQKSAVAHLGIEFTAIGEDWIEAQLMVDERTQQPFGVLHGGVSAALAETTANAGALMVCEAHQI
AVGMELNISHLKSVPAGTKAIACANPLKLGREVQVWNIDIKDEQGNLCAVARLSTKTLDKR
>Mature_140_residues
TIWKQTATCEQLNALSQKSAVAHLGIEFTAIGEDWIEAQLMVDERTQQPFGVLHGGVSAALAETTANAGALMVCEAHQIA
VGMELNISHLKSVPAGTKAIACANPLKLGREVQVWNIDIKDEQGNLCAVARLSTKTLDKR

Specific function: Unknown

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thioesterase PaaI family [H]

Homologues:

Organism=Escherichia coli, GI1786813, Length=136, Percent_Identity=48.5294117647059, Blast_Score=129, Evalue=7e-32,
Organism=Escherichia coli, GI1787976, Length=136, Percent_Identity=44.8529411764706, Blast_Score=122, Evalue=8e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003736
- InterPro:   IPR006683 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15123; Mature: 14991

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIWKQTATCEQLNALSQKSAVAHLGIEFTAIGEDWIEAQLMVDERTQQPFGVLHGGVSA
CCCCCCCCCHHHHHHHHHHCCEEECCEEEEEECCCHHEEEEEECCCCCCCCHHHHCCHHH
ALAETTANAGALMVCEAHQIAVGMELNISHLKSVPAGTKAIACANPLKLGREVQVWNIDI
HHHHHCCCCCEEEEEECCEEEEEEEECHHHHHCCCCCCEEEEECCHHHCCCEEEEEEEEE
KDEQGNLCAVARLSTKTLDKR
ECCCCCEEEEEEECCCCCCCC
>Mature Secondary Structure 
TIWKQTATCEQLNALSQKSAVAHLGIEFTAIGEDWIEAQLMVDERTQQPFGVLHGGVSA
CCCCCCCCHHHHHHHHHHCCEEECCEEEEEECCCHHEEEEEECCCCCCCCHHHHCCHHH
ALAETTANAGALMVCEAHQIAVGMELNISHLKSVPAGTKAIACANPLKLGREVQVWNIDI
HHHHHCCCCCEEEEEECCEEEEEEEECHHHHHCCCCCCEEEEECCHHHCCCEEEEEEEEE
KDEQGNLCAVARLSTKTLDKR
ECCCCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]