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The map label for this gene is yraM [C]

Identifier: 126208826

GI number: 126208826

Start: 1558781

End: 1560529

Strand: Direct

Name: yraM [C]

Synonym: APL_1362

Alternate gene names: 126208826

Gene position: 1558781-1560529 (Clockwise)

Preceding gene: 126208824

Following gene: 126208827

Centisome position: 68.53

GC content: 43.4

Gene sequence:

>1749_bases
ATGGCGACTATTTTAAAACAGAAAATAAAAACTGTCTTTGTCCCAACCGCAATGGCGCTTTTTCTTTCTGCTTGTACCGG
TACAAGTTTTTTTGAAAACCCATTAACCAAAACGGTCAAAGACGAAGCATACGCAACGTCGGAGTTTTATATCAATAAAG
CGGATCGAGCCACAGATAAAGAAGATAAAATTACTTATCGCCTATTAGCCGTTCGTAAACTGATTGATGAAAATAAAGCG
GCAGAAGCACAAAATACCTTCGACGATCTCACTCTATCGCTCGCCGATATCCAGAAAAATGAAATTCAAAAAGTAGAATA
TAACTTGGTTGCGGCGCAACTTGCGGCATTACAGGGTAATGAAGCACAAGCCGTTTCACTTTTAAGACTGGTGCCGACGA
CCCAATTAAGCCGTACGCAAAGTATGCGTTACTATCAAACACAAGCGCGTATTGCGGAAAATCGTAAAGACGTGCTTGAA
GCGGTGAGAGTGCGTTCTTTAATGACTTCTCAATTAATCGATAATAAGTTACGTCAAGAAAATAACAATCAAATTTGGTC
ATTATTACGTAATGCGAATAAAGGTGCGTTGTCTATTGCCAATCCGGGACCGGGCGAAACCGAGTTTGCCGGTTGGTTAG
CTTTAATTGCGGTTTACAACCAAAACGTTTCGACACCGGCGCAAATGCCGCAGGGTATTAATAACTGGAAACAACTCTAT
CCGAATCATAGTGCGGTAACGGTCATGCCGGCGGAGTTACAAAACGTATCAAATTTCCAACAAACCCAATTAAACGGCAT
CGCTTTACTTTTACCGTTAAGCGGTGACGCTAAAATTTTAGGCGATATTATCAAAAAAGGCTTTAATGACGCTAAAGGCG
CGGACTCCATTCCGGTGCAAACATACGATACGGATAGCGGTTCGGTCGAAAGTATTTTGGCACAGGCTAAGCAACAAGGC
GCACAAACGATTATCGGTCCGTTACTAAAATCTCGTGTCGATGAAATGTTGTTAAGTCCTGAAATCCGAAATGTGAATGT
ATTGGCTTTAAATTCGACACCAAATGTAAAAGCGATTCCGGGCGTATGTTATTACGGTTTATCGCCGGAAGCGGAAGCGA
GAGCCGGAGCGGATCGCTTATATCGCGACGGTTATTCGCGTGCTATCGTTGCCGCATCACAAGATGATTTCGGACAACGT
TCCGCAGATGCATTCTCACAACGTTGGCGACAATTAACCAATACGGATGCGGACGTACGCTATTACAATATTCCTCAAGA
TGCGGTTGTCGCAATTCAGAATTCGGGCGGTGTGCAAGGTGCGGCATTATATGCGTTAGGTACCGCCGAGCAGTTACTTG
AATTAAAACAAGGTATCGACGGTTCATCGCTTGCCGGACAATTGAATATTTATACCTCTTCACGCAGTAATTCGCCGAAT
AACGGTATCGAATTCCGTACCGCAATGGAAGGAGTGAAATTCAGTGAAATTCCTCTGCTTGCGGACCCGAATTCGGACGA
ATATAAAAAAGCGGAAACTTTAGCGGAAAGCGATTTCTCGATGATGCGTTTATATGCAATGGGTTCCGATGCTTGGGCGT
TAGCAAATAAATTCAATGAATTCCGCCAAATTCCGGGTTATAGCGTTTCAGGTTTAACCGGTAATTTAACCGCCAGCCCT
AACTGTAATATCGAACGCGGAATGTCTTGGTTGCAATATCGTAATGGTGCAGTGGAAAACGCTAACTAA

Upstream 100 bases:

>100_bases
ACAAAGTACCGTTTTGTTCGTTTTTCATTTGATTTTCACTCGTTTGATAAGTAAGATTTCAATATTATTCCGCCCATTAT
AGTCTATTAGGAGCAATACA

Downstream 100 bases:

>100_bases
ACGTTCGCAAGGTGCGAATTTTGAACAAAAAGCCCGTGAATTTTTAGAACGAAACGGGCTTAAGTTTATTGCGGCAAATC
AGCAATTCAAATGCGGCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 582; Mature: 581

Protein sequence:

>582_residues
MATILKQKIKTVFVPTAMALFLSACTGTSFFENPLTKTVKDEAYATSEFYINKADRATDKEDKITYRLLAVRKLIDENKA
AEAQNTFDDLTLSLADIQKNEIQKVEYNLVAAQLAALQGNEAQAVSLLRLVPTTQLSRTQSMRYYQTQARIAENRKDVLE
AVRVRSLMTSQLIDNKLRQENNNQIWSLLRNANKGALSIANPGPGETEFAGWLALIAVYNQNVSTPAQMPQGINNWKQLY
PNHSAVTVMPAELQNVSNFQQTQLNGIALLLPLSGDAKILGDIIKKGFNDAKGADSIPVQTYDTDSGSVESILAQAKQQG
AQTIIGPLLKSRVDEMLLSPEIRNVNVLALNSTPNVKAIPGVCYYGLSPEAEARAGADRLYRDGYSRAIVAASQDDFGQR
SADAFSQRWRQLTNTDADVRYYNIPQDAVVAIQNSGGVQGAALYALGTAEQLLELKQGIDGSSLAGQLNIYTSSRSNSPN
NGIEFRTAMEGVKFSEIPLLADPNSDEYKKAETLAESDFSMMRLYAMGSDAWALANKFNEFRQIPGYSVSGLTGNLTASP
NCNIERGMSWLQYRNGAVENAN

Sequences:

>Translated_582_residues
MATILKQKIKTVFVPTAMALFLSACTGTSFFENPLTKTVKDEAYATSEFYINKADRATDKEDKITYRLLAVRKLIDENKA
AEAQNTFDDLTLSLADIQKNEIQKVEYNLVAAQLAALQGNEAQAVSLLRLVPTTQLSRTQSMRYYQTQARIAENRKDVLE
AVRVRSLMTSQLIDNKLRQENNNQIWSLLRNANKGALSIANPGPGETEFAGWLALIAVYNQNVSTPAQMPQGINNWKQLY
PNHSAVTVMPAELQNVSNFQQTQLNGIALLLPLSGDAKILGDIIKKGFNDAKGADSIPVQTYDTDSGSVESILAQAKQQG
AQTIIGPLLKSRVDEMLLSPEIRNVNVLALNSTPNVKAIPGVCYYGLSPEAEARAGADRLYRDGYSRAIVAASQDDFGQR
SADAFSQRWRQLTNTDADVRYYNIPQDAVVAIQNSGGVQGAALYALGTAEQLLELKQGIDGSSLAGQLNIYTSSRSNSPN
NGIEFRTAMEGVKFSEIPLLADPNSDEYKKAETLAESDFSMMRLYAMGSDAWALANKFNEFRQIPGYSVSGLTGNLTASP
NCNIERGMSWLQYRNGAVENAN
>Mature_581_residues
ATILKQKIKTVFVPTAMALFLSACTGTSFFENPLTKTVKDEAYATSEFYINKADRATDKEDKITYRLLAVRKLIDENKAA
EAQNTFDDLTLSLADIQKNEIQKVEYNLVAAQLAALQGNEAQAVSLLRLVPTTQLSRTQSMRYYQTQARIAENRKDVLEA
VRVRSLMTSQLIDNKLRQENNNQIWSLLRNANKGALSIANPGPGETEFAGWLALIAVYNQNVSTPAQMPQGINNWKQLYP
NHSAVTVMPAELQNVSNFQQTQLNGIALLLPLSGDAKILGDIIKKGFNDAKGADSIPVQTYDTDSGSVESILAQAKQQGA
QTIIGPLLKSRVDEMLLSPEIRNVNVLALNSTPNVKAIPGVCYYGLSPEAEARAGADRLYRDGYSRAIVAASQDDFGQRS
ADAFSQRWRQLTNTDADVRYYNIPQDAVVAIQNSGGVQGAALYALGTAEQLLELKQGIDGSSLAGQLNIYTSSRSNSPNN
GIEFRTAMEGVKFSEIPLLADPNSDEYKKAETLAESDFSMMRLYAMGSDAWALANKFNEFRQIPGYSVSGLTGNLTASPN
CNIERGMSWLQYRNGAVENAN

Specific function: Unknown

COG id: COG3107

COG function: function code R; Putative lipoprotein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yraM [H]

Homologues:

Organism=Escherichia coli, GI1789537, Length=327, Percent_Identity=35.474006116208, Blast_Score=181, Evalue=8e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007443 [H]

Pfam domain/function: PF04348 LppC [H]

EC number: NA

Molecular weight: Translated: 63792; Mature: 63660

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATILKQKIKTVFVPTAMALFLSACTGTSFFENPLTKTVKDEAYATSEFYINKADRATDK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHEEECCCCCCCC
EDKITYRLLAVRKLIDENKAAEAQNTFDDLTLSLADIQKNEIQKVEYNLVAAQLAALQGN
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EAQAVSLLRLVPTTQLSRTQSMRYYQTQARIAENRKDVLEAVRVRSLMTSQLIDNKLRQE
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NNNQIWSLLRNANKGALSIANPGPGETEFAGWLALIAVYNQNVSTPAQMPQGINNWKQLY
CCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHC
PNHSAVTVMPAELQNVSNFQQTQLNGIALLLPLSGDAKILGDIIKKGFNDAKGADSIPVQ
CCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEE
TYDTDSGSVESILAQAKQQGAQTIIGPLLKSRVDEMLLSPEIRNVNVLALNSTPNVKAIP
EECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEECC
GVCYYGLSPEAEARAGADRLYRDGYSRAIVAASQDDFGQRSADAFSQRWRQLTNTDADVR
CEEEECCCCCCHHHHCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEE
YYNIPQDAVVAIQNSGGVQGAALYALGTAEQLLELKQGIDGSSLAGQLNIYTSSRSNSPN
EEECCCCCEEEEECCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
NGIEFRTAMEGVKFSEIPLLADPNSDEYKKAETLAESDFSMMRLYAMGSDAWALANKFNE
CCCCHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHCCHHHHHHEECCCCHHHHHHHHHH
FRQIPGYSVSGLTGNLTASPNCNIERGMSWLQYRNGAVENAN
HHHCCCCEECCCCCCEECCCCCCHHHCCHHHHHCCCCCCCCC
>Mature Secondary Structure 
ATILKQKIKTVFVPTAMALFLSACTGTSFFENPLTKTVKDEAYATSEFYINKADRATDK
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHEEECCCCCCCC
EDKITYRLLAVRKLIDENKAAEAQNTFDDLTLSLADIQKNEIQKVEYNLVAAQLAALQGN
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EAQAVSLLRLVPTTQLSRTQSMRYYQTQARIAENRKDVLEAVRVRSLMTSQLIDNKLRQE
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NNNQIWSLLRNANKGALSIANPGPGETEFAGWLALIAVYNQNVSTPAQMPQGINNWKQLY
CCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHC
PNHSAVTVMPAELQNVSNFQQTQLNGIALLLPLSGDAKILGDIIKKGFNDAKGADSIPVQ
CCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEE
TYDTDSGSVESILAQAKQQGAQTIIGPLLKSRVDEMLLSPEIRNVNVLALNSTPNVKAIP
EECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEECC
GVCYYGLSPEAEARAGADRLYRDGYSRAIVAASQDDFGQRSADAFSQRWRQLTNTDADVR
CEEEECCCCCCHHHHCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEE
YYNIPQDAVVAIQNSGGVQGAALYALGTAEQLLELKQGIDGSSLAGQLNIYTSSRSNSPN
EEECCCCCEEEEECCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
NGIEFRTAMEGVKFSEIPLLADPNSDEYKKAETLAESDFSMMRLYAMGSDAWALANKFNE
CCCCHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHCCHHHHHHEECCCCHHHHHHHHHH
FRQIPGYSVSGLTGNLTASPNCNIERGMSWLQYRNGAVENAN
HHHCCCCEECCCCCCEECCCCCCHHHCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]