Click here to switch to the map view.

The map label for this gene is yfcM [C]

Identifier: 126208824

GI number: 126208824

Start: 1557241

End: 1557810

Strand: Direct

Name: yfcM [C]

Synonym: APL_1360

Alternate gene names: 126208824

Gene position: 1557241-1557810 (Clockwise)

Preceding gene: 126208823

Following gene: 126208826

Centisome position: 68.47

GC content: 44.21

Gene sequence:

>570_bases
ATGAACCAAGACAATCATAAAATTAAAGACATTATTCGTATTTTCGATGAATGTTTCGCCGAAGAATACAATACCCGCTT
AGAAAAGGGCGAAGACTACCCGATTTACCTACCGGCATTTTTAGATGAAGACGGCGTGAAATCCGATCGCCCGTACAATG
TTATTCTATTTGCACACGGTTATTACAGCAGTGCGTTACACGAAATTTCACATTGGCTGGTTGCCGGAACTGAACGCCGT
AAATTAGAAGATTTCGGTTATTGGTACGAACCGGACGGACGCTCGGCGGAGCGTCAGCGTGAATTTGAATCGGTGGAAGT
TAAACCGCAAGCGATTGAATGGGTGTTAGCAACTGCCGCCGGATTCCGCTATTTTGCCAGTGCGGATAATCTTTCCGGCA
ATCCGGGCGATAATTCCGCGTTTAAACAAGCGGTTTTTGATCAGGTAAAAATTTATGCGGAGCGTGGTTATTTACCGAAA
CGAGCCGAAACGCTACGTAAAGCGTTAGCCGAATTCTACGGCACAGAGGATAAAATTGATTTAGCAAATTTTGATTTGGC
GAGAATCTAA

Upstream 100 bases:

>100_bases
CTTAGAAGCAAATCAATTTTTAAATTGGCTAAATCAGTTATAATCTCACGGCACAAGTTGATCGCTTGTGCCATTTTTTA
TTAATCACAATAAGTTTGCT

Downstream 100 bases:

>100_bases
CAAATAAGCGGTTAAATTTTTAGGAAATTTAACCGCTTGTATTTTAGTTATCGGAAAGATATTCTAAACCGTACTGATAA
AGTGCATTCTTTTTATAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MNQDNHKIKDIIRIFDECFAEEYNTRLEKGEDYPIYLPAFLDEDGVKSDRPYNVILFAHGYYSSALHEISHWLVAGTERR
KLEDFGYWYEPDGRSAERQREFESVEVKPQAIEWVLATAAGFRYFASADNLSGNPGDNSAFKQAVFDQVKIYAERGYLPK
RAETLRKALAEFYGTEDKIDLANFDLARI

Sequences:

>Translated_189_residues
MNQDNHKIKDIIRIFDECFAEEYNTRLEKGEDYPIYLPAFLDEDGVKSDRPYNVILFAHGYYSSALHEISHWLVAGTERR
KLEDFGYWYEPDGRSAERQREFESVEVKPQAIEWVLATAAGFRYFASADNLSGNPGDNSAFKQAVFDQVKIYAERGYLPK
RAETLRKALAEFYGTEDKIDLANFDLARI
>Mature_189_residues
MNQDNHKIKDIIRIFDECFAEEYNTRLEKGEDYPIYLPAFLDEDGVKSDRPYNVILFAHGYYSSALHEISHWLVAGTERR
KLEDFGYWYEPDGRSAERQREFESVEVKPQAIEWVLATAAGFRYFASADNLSGNPGDNSAFKQAVFDQVKIYAERGYLPK
RAETLRKALAEFYGTEDKIDLANFDLARI

Specific function: Unknown

COG id: COG3101

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yfcM [H]

Homologues:

Organism=Escherichia coli, GI1788666, Length=174, Percent_Identity=49.4252873563218, Blast_Score=173, Evalue=5e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007411 [H]

Pfam domain/function: PF04315 DUF462 [H]

EC number: NA

Molecular weight: Translated: 21898; Mature: 21898

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00142 ZINC_PROTEASE ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQDNHKIKDIIRIFDECFAEEYNTRLEKGEDYPIYLPAFLDEDGVKSDRPYNVILFAHG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEECC
YYSSALHEISHWLVAGTERRKLEDFGYWYEPDGRSAERQREFESVEVKPQAIEWVLATAA
HHHHHHHHHHHHHHCCCHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
GFRYFASADNLSGNPGDNSAFKQAVFDQVKIYAERGYLPKRAETLRKALAEFYGTEDKID
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEE
LANFDLARI
ECCCCHHCC
>Mature Secondary Structure
MNQDNHKIKDIIRIFDECFAEEYNTRLEKGEDYPIYLPAFLDEDGVKSDRPYNVILFAHG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEECC
YYSSALHEISHWLVAGTERRKLEDFGYWYEPDGRSAERQREFESVEVKPQAIEWVLATAA
HHHHHHHHHHHHHHCCCHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
GFRYFASADNLSGNPGDNSAFKQAVFDQVKIYAERGYLPKRAETLRKALAEFYGTEDKID
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEE
LANFDLARI
ECCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]