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The map label for this gene is yciU [C]

Identifier: 126208812

GI number: 126208812

Start: 1547971

End: 1548282

Strand: Direct

Name: yciU [C]

Synonym: APL_1348

Alternate gene names: 126208812

Gene position: 1547971-1548282 (Clockwise)

Preceding gene: 126208811

Following gene: 126208813

Centisome position: 68.06

GC content: 41.67

Gene sequence:

>312_bases
ATGAACAAATTAACTCCGGATGAAGCGATTGATCTCGCTTATGATATTTTCCTTGAAATGGCAGGTGAGAACTTGGATCC
TGCGGATATTTTATTATTCAATTTACAATTTGAAGAGCGCGGCGCGGTAGAAATGGTCGAAACCTCGGAGAATTGGGATC
AAGAAATCGGTACGTTAATCGATCCCGACGCTTTTGCCGAAGTATGGGTCGGTTTAGTAAACGATAAAGATGAAATGGAT
GACGTATTCGCTCGTTTCTTGATTTCTCACGATGCGGATAACCGAGAATATCACGTGATCTGGAAGGAATAA

Upstream 100 bases:

>100_bases
GACAAGTAATAAGTCGCTTGATCCAATGTCTATAAATTTGACTTTCTAAACCTTTATTGGCAAATTAAGTCGCTATTTTT
TTATATAAAAGAAACAAATT

Downstream 100 bases:

>100_bases
TTTAAAAGGAGCTTTATGTCTTGTATTCCGAAACCTCAAGAGGTACCTGAATTTTCACAACAATTTCGTAATGCGATGGC
GCATTTATCCGCTGCGGTAA

Product: dsDNA-mimic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MNKLTPDEAIDLAYDIFLEMAGENLDPADILLFNLQFEERGAVEMVETSENWDQEIGTLIDPDAFAEVWVGLVNDKDEMD
DVFARFLISHDADNREYHVIWKE

Sequences:

>Translated_103_residues
MNKLTPDEAIDLAYDIFLEMAGENLDPADILLFNLQFEERGAVEMVETSENWDQEIGTLIDPDAFAEVWVGLVNDKDEMD
DVFARFLISHDADNREYHVIWKE
>Mature_103_residues
MNKLTPDEAIDLAYDIFLEMAGENLDPADILLFNLQFEERGAVEMVETSENWDQEIGTLIDPDAFAEVWVGLVNDKDEMD
DVFARFLISHDADNREYHVIWKE

Specific function: Unknown

COG id: COG3099

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0263 family

Homologues:

Organism=Escherichia coli, GI87081860, Length=103, Percent_Identity=52.4271844660194, Blast_Score=114, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1348_ACTP2 (A3N1Z6)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001054037.1
- ProteinModelPortal:   A3N1Z6
- SMR:   A3N1Z6
- STRING:   A3N1Z6
- GeneID:   4850449
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_1348
- eggNOG:   COG3099
- HOGENOM:   HBG298413
- OMA:   DIAYDIF
- PhylomeDB:   A3N1Z6
- ProtClustDB:   PRK05094
- BioCyc:   APLE416269:APL_1348-MONOMER
- HAMAP:   MF_00680
- InterPro:   IPR007376
- PIRSF:   PIRSF004916
- ProDom:   PD020447

Pfam domain/function: PF04269 DUF440; SSF102816 dsDNA_mimic_put

EC number: NA

Molecular weight: Translated: 11923; Mature: 11923

Theoretical pI: Translated: 3.65; Mature: 3.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLTPDEAIDLAYDIFLEMAGENLDPADILLFNLQFEERGAVEMVETSENWDQEIGTLI
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHCCCCC
DPDAFAEVWVGLVNDKDEMDDVFARFLISHDADNREYHVIWKE
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure
MNKLTPDEAIDLAYDIFLEMAGENLDPADILLFNLQFEERGAVEMVETSENWDQEIGTLI
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHCCCCC
DPDAFAEVWVGLVNDKDEMDDVFARFLISHDADNREYHVIWKE
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA