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The map label for this gene is hybB [H]

Identifier: 126208797

GI number: 126208797

Start: 1529902

End: 1531083

Strand: Direct

Name: hybB [H]

Synonym: APL_1333

Alternate gene names: 126208797

Gene position: 1529902-1531083 (Clockwise)

Preceding gene: 126208796

Following gene: 126208798

Centisome position: 67.26

GC content: 41.2

Gene sequence:

>1182_bases
ATGGCTAAAGCTCGTCCTCTCGGCGGTCGTTTAATATCAATCCCCGTATTGGTATTCGCACCGCTTGCCGCTATTTGCGC
TTTATTAATATTACGTCGTCTGATTTTCGGTATCGGTTCCGTGACCGAACTGAACGGCGGTTATCCTTGGGGGTTATGGA
TCGGTTTCGACTTATTGGTCGGAACGGGATTGGCCTGCGGGGGCTGGGCGTTAGCATGGACGGTATATGTCTTTAATAAA
GGTAAATACCACCCTTTAGTACGTCCCGCATTATTAGCCAGCTTATTCGGATATACCTTAGGCGGCTTATCCATCACTAT
CGATATGGGGCGTTATTGGCATTTGCCTTATTTTTTCATGCCGGGACAATTCAATACCTCTTCCGTATTATTTGAAACGG
CGGCATGTATGACCGTTTATATTTGTGTTGTGACCTTAGAGTTCGCACCGGTCATTTTAGGTTACTTCGGTTTGAAAAAA
TGGTTCGATAAGCTGAATAAAATCATGTTTTTCTTAGTTGCGTTAGGCGCTTTATTACCGATGATGCACCAATCCTCAAT
GGGTTCTTTAATGATTGTTGCAGGTCATAAAGTACACCCTGTATGGCAAAGTTACGAAATGCTGCCTATCTTTTCGTTAT
TTACCGCATTTATTATGGGCTTCTCCATTATTATTTTCGAAGGATCATTAGTCAAAGCGGGATTAGCGGGAAAAGCACCG
GACGAAAGACATTTATTCACACGTTTAGCCAGAGTAGCGGCAATTCTAATCGGATTATTTATCGTCGTTCGTTTCGGAGA
GTTAATTTATAACGATAAGTTACATTACGTCTTACAAGGCGATTTCTATTCATTAATGTTTTGGTTAGAAGTAAGCTTAA
TGTCCCTACCTATTTTCACATTATTCTTAGGCGACAAATTTTCCGATAGCCGTTGGTTGTTTATCTCGGCACTTTGTATG
ATCGGCGGCTCGGCATTATGGCGTATGAATTATTCCATCATTATGTTTGATCCGGGCATGGGGTACGATTACTTCCCGTC
GGCGCCGGAACTATTAATTTCAATCGGTTTTATTTCTATTGAAATTTGCGCCTATATATTAATTGTTAGATTATTCCCTG
TATTACCAGTTATCCAAGAAGCACATCAAGAAAATAATATTCAATCCGGAGTGAGAGCATGA

Upstream 100 bases:

>100_bases
ACTTATAGAAGTCTGCATGCGGATAAAATCGAAGCTAAAAAACAGGAATGGAAATTAGCTCGCGAACAGATGAAAGTAGA
AGAAGAGAAGGAGGATCACC

Downstream 100 bases:

>100_bases
CAACTAAACAACGTATTACTATCGACCCTGTTACGCGTATCGAAGGTCATTTACGTATCGATTGTGAAATCGAAGACGGA
AAAGTCACCAATGCTTGGTC

Product: putative hydrogenase 2 b cytochrome subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MAKARPLGGRLISIPVLVFAPLAAICALLILRRLIFGIGSVTELNGGYPWGLWIGFDLLVGTGLACGGWALAWTVYVFNK
GKYHPLVRPALLASLFGYTLGGLSITIDMGRYWHLPYFFMPGQFNTSSVLFETAACMTVYICVVTLEFAPVILGYFGLKK
WFDKLNKIMFFLVALGALLPMMHQSSMGSLMIVAGHKVHPVWQSYEMLPIFSLFTAFIMGFSIIIFEGSLVKAGLAGKAP
DERHLFTRLARVAAILIGLFIVVRFGELIYNDKLHYVLQGDFYSLMFWLEVSLMSLPIFTLFLGDKFSDSRWLFISALCM
IGGSALWRMNYSIIMFDPGMGYDYFPSAPELLISIGFISIEICAYILIVRLFPVLPVIQEAHQENNIQSGVRA

Sequences:

>Translated_393_residues
MAKARPLGGRLISIPVLVFAPLAAICALLILRRLIFGIGSVTELNGGYPWGLWIGFDLLVGTGLACGGWALAWTVYVFNK
GKYHPLVRPALLASLFGYTLGGLSITIDMGRYWHLPYFFMPGQFNTSSVLFETAACMTVYICVVTLEFAPVILGYFGLKK
WFDKLNKIMFFLVALGALLPMMHQSSMGSLMIVAGHKVHPVWQSYEMLPIFSLFTAFIMGFSIIIFEGSLVKAGLAGKAP
DERHLFTRLARVAAILIGLFIVVRFGELIYNDKLHYVLQGDFYSLMFWLEVSLMSLPIFTLFLGDKFSDSRWLFISALCM
IGGSALWRMNYSIIMFDPGMGYDYFPSAPELLISIGFISIEICAYILIVRLFPVLPVIQEAHQENNIQSGVRA
>Mature_392_residues
AKARPLGGRLISIPVLVFAPLAAICALLILRRLIFGIGSVTELNGGYPWGLWIGFDLLVGTGLACGGWALAWTVYVFNKG
KYHPLVRPALLASLFGYTLGGLSITIDMGRYWHLPYFFMPGQFNTSSVLFETAACMTVYICVVTLEFAPVILGYFGLKKW
FDKLNKIMFFLVALGALLPMMHQSSMGSLMIVAGHKVHPVWQSYEMLPIFSLFTAFIMGFSIIIFEGSLVKAGLAGKAPD
ERHLFTRLARVAAILIGLFIVVRFGELIYNDKLHYVLQGDFYSLMFWLEVSLMSLPIFTLFLGDKFSDSRWLFISALCMI
GGSALWRMNYSIIMFDPGMGYDYFPSAPELLISIGFISIEICAYILIVRLFPVLPVIQEAHQENNIQSGVRA

Specific function: Probable b-type cytochrome [H]

COG id: COG5557

COG function: function code C; Polysulphide reductase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI2367183, Length=385, Percent_Identity=64.6753246753247, Blast_Score=519, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 43849; Mature: 43718

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKARPLGGRLISIPVLVFAPLAAICALLILRRLIFGIGSVTELNGGYPWGLWIGFDLLV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHH
GTGLACGGWALAWTVYVFNKGKYHPLVRPALLASLFGYTLGGLSITIDMGRYWHLPYFFM
HCCCCCCCHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCEEECCEEEC
PGQFNTSSVLFETAACMTVYICVVTLEFAPVILGYFGLKKWFDKLNKIMFFLVALGALLP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMHQSSMGSLMIVAGHKVHPVWQSYEMLPIFSLFTAFIMGFSIIIFEGSLVKAGLAGKAP
HHHHCCCCCEEEEECCEECHHHHCCCHHHHHHHHHHHHHHHEEEEEECCHHCCCCCCCCC
DERHLFTRLARVAAILIGLFIVVRFGELIYNDKLHYVLQGDFYSLMFWLEVSLMSLPIFT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
LFLGDKFSDSRWLFISALCMIGGSALWRMNYSIIMFDPGMGYDYFPSAPELLISIGFISI
HHHCCCCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
EICAYILIVRLFPVLPVIQEAHQENNIQSGVRA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AKARPLGGRLISIPVLVFAPLAAICALLILRRLIFGIGSVTELNGGYPWGLWIGFDLLV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHH
GTGLACGGWALAWTVYVFNKGKYHPLVRPALLASLFGYTLGGLSITIDMGRYWHLPYFFM
HCCCCCCCHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCEEECCEEEC
PGQFNTSSVLFETAACMTVYICVVTLEFAPVILGYFGLKKWFDKLNKIMFFLVALGALLP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMHQSSMGSLMIVAGHKVHPVWQSYEMLPIFSLFTAFIMGFSIIIFEGSLVKAGLAGKAP
HHHHCCCCCEEEEECCEECHHHHCCCHHHHHHHHHHHHHHHEEEEEECCHHCCCCCCCCC
DERHLFTRLARVAAILIGLFIVVRFGELIYNDKLHYVLQGDFYSLMFWLEVSLMSLPIFT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
LFLGDKFSDSRWLFISALCMIGGSALWRMNYSIIMFDPGMGYDYFPSAPELLISIGFISI
HHHCCCCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
EICAYILIVRLFPVLPVIQEAHQENNIQSGVRA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8021226; 9278503 [H]