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The map label for this gene is yrbD [C]

Identifier: 126208756

GI number: 126208756

Start: 1479783

End: 1480310

Strand: Reverse

Name: yrbD [C]

Synonym: APL_1290

Alternate gene names: 126208756

Gene position: 1480310-1479783 (Counterclockwise)

Preceding gene: 126208757

Following gene: 126208755

Centisome position: 65.08

GC content: 39.77

Gene sequence:

>528_bases
ATGCGTCAATCAATTAAATATGAATTTTGGGTAGGTCTATTTGTATTATTCGGCTTAGCCGCATTAGTATTCTTAGGCTT
ACGAGTAGCGAACGTACAAGGGTTTACTTCGGAAAAAACTTATACGCTCTATGCAACTTTTGACAATATCGGCGGACTAA
AAGTGCGTGCGCCGATTAAGGTCGGCGGGGTAGTCGTAGGGCGAGTTTCGGATATTAGTTTGGACGCCCAAACTTATACG
CCTAAAGTATCGTTAGCGGTAAATGAAGATTTTAATAAAATTCCGGATACCAGTTCGCTTTCGATTAAAACGTCAGGTTT
ATTGGGTGAACAATATATTGCGTTAAACGTCGGTTTTATGTTGGAAGGCGAAACGGAATATATGAAAGAAGGTAGCAGTT
TTGTCGATACCAATTCGGCAATGGTATTGGAAGATTTGATCGGTCAGTTCTTATACGGTGATAAAAAATCGGATAAAACT
GACGGAGAAAATGCGGAAGGTAAGGAAGAAGAACCTAAAGCACAATAA

Upstream 100 bases:

>100_bases
AACGACCAGAACGGTAGTACACGCTTCATTAGTCGTACTCGGATTGGATTTTATTTTAACCGCAATTATGTTCGGCGGTT
AATTCACAAAGGAAAAGATA

Downstream 100 bases:

>100_bases
TTACAATTACTTAATGTTATACGGTAAGTAAGATTTTATTTCGGGTGGGATGACCGCCTTACATTTGGAGATTTTAAATG
TTAAAAAATATCAAAAAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MRQSIKYEFWVGLFVLFGLAALVFLGLRVANVQGFTSEKTYTLYATFDNIGGLKVRAPIKVGGVVVGRVSDISLDAQTYT
PKVSLAVNEDFNKIPDTSSLSIKTSGLLGEQYIALNVGFMLEGETEYMKEGSSFVDTNSAMVLEDLIGQFLYGDKKSDKT
DGENAEGKEEEPKAQ

Sequences:

>Translated_175_residues
MRQSIKYEFWVGLFVLFGLAALVFLGLRVANVQGFTSEKTYTLYATFDNIGGLKVRAPIKVGGVVVGRVSDISLDAQTYT
PKVSLAVNEDFNKIPDTSSLSIKTSGLLGEQYIALNVGFMLEGETEYMKEGSSFVDTNSAMVLEDLIGQFLYGDKKSDKT
DGENAEGKEEEPKAQ
>Mature_175_residues
MRQSIKYEFWVGLFVLFGLAALVFLGLRVANVQGFTSEKTYTLYATFDNIGGLKVRAPIKVGGVVVGRVSDISLDAQTYT
PKVSLAVNEDFNKIPDTSSLSIKTSGLLGEQYIALNVGFMLEGETEYMKEGSSFVDTNSAMVLEDLIGQFLYGDKKSDKT
DGENAEGKEEEPKAQ

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=164, Percent_Identity=60.3658536585366, Blast_Score=193, Evalue=5e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 19130; Mature: 19130

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQSIKYEFWVGLFVLFGLAALVFLGLRVANVQGFTSEKTYTLYATFDNIGGLKVRAPIK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEECCEE
VGGVVVGRVSDISLDAQTYTPKVSLAVNEDFNKIPDTSSLSIKTSGLLGEQYIALNVGFM
ECCEEEEEEECEEECCEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEE
LEGETEYMKEGSSFVDTNSAMVLEDLIGQFLYGDKKSDKTDGENAEGKEEEPKAQ
EECCHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRQSIKYEFWVGLFVLFGLAALVFLGLRVANVQGFTSEKTYTLYATFDNIGGLKVRAPIK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEECCEE
VGGVVVGRVSDISLDAQTYTPKVSLAVNEDFNKIPDTSSLSIKTSGLLGEQYIALNVGFM
ECCEEEEEEECEEECCEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEE
LEGETEYMKEGSSFVDTNSAMVLEDLIGQFLYGDKKSDKTDGENAEGKEEEPKAQ
EECCHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]