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The map label for this gene is ygdK [C]

Identifier: 126208747

GI number: 126208747

Start: 1472393

End: 1472785

Strand: Direct

Name: ygdK [C]

Synonym: APL_1281

Alternate gene names: 126208747

Gene position: 1472393-1472785 (Clockwise)

Preceding gene: 126208742

Following gene: 126208750

Centisome position: 64.74

GC content: 39.69

Gene sequence:

>393_bases
ATGACTTTAACTGACATTCATCAAAAATTCGAGCTCTGCAAATCTTGGGAGGAAAGATACCGCTTGCTGATTCAATTAAG
CCGTCAGTTAGCTAAACCGACTGAAGAAGAGTTAGCGCAATTGCCTGAAATTCACGGCTGCGAAAGTCGTTTATGGTTTG
AGTTTCAAGCGACACCACGTAAGGTTCGCGCCTATAGCGACGCCCGTTTAATGCAAGGGATTTTATTTATTGTCACTATT
GCGTTGTCGGAAAAATCCATCAGCGAATTACAAACATTCTCAATTCCAAAACTTTTTGAAACATTAAAAATTTCCCAAAA
TTTGACCAGTACTCGTCTTAACGGCTTGCAACAAATCCAAGCGGTTATTTCACGTTTATGTCAAAGCGAATAA

Upstream 100 bases:

>100_bases
CAAAAAACGAGTAATTCTATCAAACTTTAAGAAAATCATTAACAATAAGCGGTCAGATTGTTAAAATCTTTTGCAAAATT
TAGAGGTAATCAATAAAAAT

Downstream 100 bases:

>100_bases
ATGATTGATTCTATAAAACGAAAAAAGCCTCTGATTTCTCAGAGGCTTTTTCTTGAAAAAGTGGCGGAACGGACGGGACT
CGAACCCGCGACCCCCTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MTLTDIHQKFELCKSWEERYRLLIQLSRQLAKPTEEELAQLPEIHGCESRLWFEFQATPRKVRAYSDARLMQGILFIVTI
ALSEKSISELQTFSIPKLFETLKISQNLTSTRLNGLQQIQAVISRLCQSE

Sequences:

>Translated_130_residues
MTLTDIHQKFELCKSWEERYRLLIQLSRQLAKPTEEELAQLPEIHGCESRLWFEFQATPRKVRAYSDARLMQGILFIVTI
ALSEKSISELQTFSIPKLFETLKISQNLTSTRLNGLQQIQAVISRLCQSE
>Mature_129_residues
TLTDIHQKFELCKSWEERYRLLIQLSRQLAKPTEEELAQLPEIHGCESRLWFEFQATPRKVRAYSDARLMQGILFIVTIA
LSEKSISELQTFSIPKLFETLKISQNLTSTRLNGLQQIQAVISRLCQSE

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=126, Percent_Identity=32.5396825396825, Blast_Score=70, Evalue=5e-14,
Organism=Escherichia coli, GI1787969, Length=113, Percent_Identity=26.5486725663717, Blast_Score=63, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15128; Mature: 14997

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTDIHQKFELCKSWEERYRLLIQLSRQLAKPTEEELAQLPEIHGCESRLWFEFQATPR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEEECCCHH
KVRAYSDARLMQGILFIVTIALSEKSISELQTFSIPKLFETLKISQNLTSTRLNGLQQIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVISRLCQSE
HHHHHHHCCC
>Mature Secondary Structure 
TLTDIHQKFELCKSWEERYRLLIQLSRQLAKPTEEELAQLPEIHGCESRLWFEFQATPR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEEECCCHH
KVRAYSDARLMQGILFIVTIALSEKSISELQTFSIPKLFETLKISQNLTSTRLNGLQQIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVISRLCQSE
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]