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The map label for this gene is yhgF [C]

Identifier: 126208738

GI number: 126208738

Start: 1461636

End: 1463975

Strand: Reverse

Name: yhgF [C]

Synonym: APL_1272

Alternate gene names: 126208738

Gene position: 1463975-1461636 (Counterclockwise)

Preceding gene: 126208739

Following gene: 126208733

Centisome position: 64.37

GC content: 45.04

Gene sequence:

>2340_bases
ATGTCAGAGCTCAATACACAAATTAGCCAGATTATTGCCACAGAACTTTCTGTTGGCTCACATCAAATCCTCGCTGCAAT
CAAATTACTCGATGAGGGTAATACCATTCCATTTATCGCACGTTATCGTAAAGAGGTTACCGGCGGTTTAGACGACACTC
AATTACGTCACTTTGAAACACGTTTAATTTATTTGCGTGAGTTGGACGATCGCCGTCAAACGATCCTTAAGTCGATTGAA
GATCAAGGCAAACTAACGGACGAATTACGAACAAAAATCGAAACGACCGAAAGTAAAACCGAATTAGAAGATCTTTATCT
GCCTTATAAACCGAAACGCCGTACTCGTGGGCAGATTGCGATTGAGTCGGGGCTTGAGCCATTGGCAGATAGCTTATGGA
ATGATCCTAGCCAATTACCAGAAACGTTAGCGGAAACTTTTGTTGATGCAGAAAAAGGTGTAGCGGATGTTAAATCTGCG
TTAGACGGTGCGCGTTATATTCTGATGGAGCGTTTTTCAGAAGATGCCGAATTACTTGCAAAATTACGCCAATATTTGAC
CGCTTACGCAACGCTAGAATCAAAAGTGATTGAAGGTAAGGAAGAAGAAGGCGAGAAATTCCGAGATTATTTTGCGCATA
GCGAACCGTTTAAAACCGTACCTTCACACCGTGCGTTAGCAATGTTCCGAGGCAGAAACGAAGGCGTATTATCGCTTTCG
TTAAATGCGGATCCTGAAGCGGAAGAAGGCGCTCGAACAAGCCATTGCGAAGAAATTATTCGTCAGCATTTAGGTGTGAT
ATTCAATCAACAACCGGCAGACAAATGGCGTGAGCAAGTGATTGCTTGGACATGGAAAATTAAAGCGGCACTTCATTTGG
AAACCGAATTAATGGGCGCATTGCGTGAGAAAGCGGAAGAAGAAGCGATTGACGTATTTGCTCGCAATCTGTCTGCGCTA
TTAATGGCAGCACCGGCAGGTGCAAAAAATACCATGGGCTTAGACCCGGGCTTACGTACCGGTGTGAAAGTAGCTGTGGT
GGACAATACCGGTAAATTATTGGCGACCGATACCATTTATCCGCACACGACAGGCAAAGCGGCAGCGGAAGTTTCGCTGT
ATAAATTAATTAAGCAGCATAATGTTGAGCTGATTGCGATTGGGAACGGTACGGCTTCTCGTGAAACGGAGCGTTTTGCC
AAGGATGTGTTAAAACAGATCAAAGAAAACAAACCGGATATGTTGATTCCTCAAACTGTAGTGGTAAGTGAGGCGGGCGC
TTCGGTTTATTCGGCTTCCGAATTAGCGGCAAATGAATTTCCAGAACTCGATGTTTCATTACGTGGTGCGGTATCGATTG
CTCGCCGTTTACAAGATCCTCTAGCGGAATTGGTAAAAATCGAACCGAAAGCGATTGGCGTGGGGCAGTATCAGCACGAT
GTTAACCAGTCACAACTGGCTCGCAAACTGGATGCAGTAGTTGAAGACTGTGTAAATGCGGTTGGGGTGGATCTTAATAC
CGCTTCTGCAGCGTTATTGGCTCGTGTTGCCGGTATGAGCAAAACATTAGCACAAAATATCGTGGCGTTTCGTGATGAAA
ACGGACGTTTTAACGCACGTTCCGACCTGAAAAAAGTGCCTCGTTTAGGGCCGAAAGCCTTTGAACAGTGTGCCGGTTTT
ATGCGAATTGTCGGCGGTAAAAATGCGTTAGACGCTTCGAGCGTGCATCCGGAGGCTTATCCGGTGGTGGAAAAAATTCT
CCAAGCAACCGATTCAACCCTTGCGGAATTAATGGGTAATGCGACTCGTATTCACCAACTGAATGCAAAAGACTTTGTGG
ACGAACAATTCGGTTTACCGACTGTAAACGATATTTTCAAAGAGTTGGAAAAACCGGGACGCGATCCTCGTGGTGAATTT
AAAACGGCAACCTTTATGGATGGCGTAGAAGATATTAAGGATCTGAAAGTCGGAATGATCTTAGAGGGGACGGTAACTAA
TGTGGCGAATTTCGGTGCTTTTGTGGATATCGGTGTGCATCAAGACGGTTTAGTGCATATTTCAATGCTATCGAACAGCT
TTGTGGAAGATCCGCATAAAGTGGTGAAAGTCGGTGATTTGGTGAAAGTGAAGGTCTTAGAAGTGGACGTACAGCGTAAA
CGTATTGCGCTCACTATGCGTTTAGAAGATAAGCCGACCGACAAACCGGCAAGCGGTCGAAATCCGCAAGAAAATCGCAA
AAATAGCGAAAAATCCGACCGCTTCTCTGGCAATAAATCGCAACATAATCAGTTCGCCAACAATGCGTTTGCCGATGCGT
TGAAAGGTTGGAAGAAGTAA

Upstream 100 bases:

>100_bases
AATCAAGAGCGGCGGCACTACGCTAGCTCGAACTTTTATTTTTGGGCATTGTCTTTTTTACTGATAAAATAAAGCGAATT
TTATTTGTTAGGAAAACGTA

Downstream 100 bases:

>100_bases
TTCCCCCTCTCTGCTTGTTTTCGCTAAACGCTTCAATAAGCTGTCTCTCTCCCGCAAGGGGAGAGAGTAGAATATAGCTT
AAATAAAACCACGGAACACA

Product: transcriptional accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 779; Mature: 778

Protein sequence:

>779_residues
MSELNTQISQIIATELSVGSHQILAAIKLLDEGNTIPFIARYRKEVTGGLDDTQLRHFETRLIYLRELDDRRQTILKSIE
DQGKLTDELRTKIETTESKTELEDLYLPYKPKRRTRGQIAIESGLEPLADSLWNDPSQLPETLAETFVDAEKGVADVKSA
LDGARYILMERFSEDAELLAKLRQYLTAYATLESKVIEGKEEEGEKFRDYFAHSEPFKTVPSHRALAMFRGRNEGVLSLS
LNADPEAEEGARTSHCEEIIRQHLGVIFNQQPADKWREQVIAWTWKIKAALHLETELMGALREKAEEEAIDVFARNLSAL
LMAAPAGAKNTMGLDPGLRTGVKVAVVDNTGKLLATDTIYPHTTGKAAAEVSLYKLIKQHNVELIAIGNGTASRETERFA
KDVLKQIKENKPDMLIPQTVVVSEAGASVYSASELAANEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHD
VNQSQLARKLDAVVEDCVNAVGVDLNTASAALLARVAGMSKTLAQNIVAFRDENGRFNARSDLKKVPRLGPKAFEQCAGF
MRIVGGKNALDASSVHPEAYPVVEKILQATDSTLAELMGNATRIHQLNAKDFVDEQFGLPTVNDIFKELEKPGRDPRGEF
KTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKVLEVDVQRK
RIALTMRLEDKPTDKPASGRNPQENRKNSEKSDRFSGNKSQHNQFANNAFADALKGWKK

Sequences:

>Translated_779_residues
MSELNTQISQIIATELSVGSHQILAAIKLLDEGNTIPFIARYRKEVTGGLDDTQLRHFETRLIYLRELDDRRQTILKSIE
DQGKLTDELRTKIETTESKTELEDLYLPYKPKRRTRGQIAIESGLEPLADSLWNDPSQLPETLAETFVDAEKGVADVKSA
LDGARYILMERFSEDAELLAKLRQYLTAYATLESKVIEGKEEEGEKFRDYFAHSEPFKTVPSHRALAMFRGRNEGVLSLS
LNADPEAEEGARTSHCEEIIRQHLGVIFNQQPADKWREQVIAWTWKIKAALHLETELMGALREKAEEEAIDVFARNLSAL
LMAAPAGAKNTMGLDPGLRTGVKVAVVDNTGKLLATDTIYPHTTGKAAAEVSLYKLIKQHNVELIAIGNGTASRETERFA
KDVLKQIKENKPDMLIPQTVVVSEAGASVYSASELAANEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHD
VNQSQLARKLDAVVEDCVNAVGVDLNTASAALLARVAGMSKTLAQNIVAFRDENGRFNARSDLKKVPRLGPKAFEQCAGF
MRIVGGKNALDASSVHPEAYPVVEKILQATDSTLAELMGNATRIHQLNAKDFVDEQFGLPTVNDIFKELEKPGRDPRGEF
KTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKVLEVDVQRK
RIALTMRLEDKPTDKPASGRNPQENRKNSEKSDRFSGNKSQHNQFANNAFADALKGWKK
>Mature_778_residues
SELNTQISQIIATELSVGSHQILAAIKLLDEGNTIPFIARYRKEVTGGLDDTQLRHFETRLIYLRELDDRRQTILKSIED
QGKLTDELRTKIETTESKTELEDLYLPYKPKRRTRGQIAIESGLEPLADSLWNDPSQLPETLAETFVDAEKGVADVKSAL
DGARYILMERFSEDAELLAKLRQYLTAYATLESKVIEGKEEEGEKFRDYFAHSEPFKTVPSHRALAMFRGRNEGVLSLSL
NADPEAEEGARTSHCEEIIRQHLGVIFNQQPADKWREQVIAWTWKIKAALHLETELMGALREKAEEEAIDVFARNLSALL
MAAPAGAKNTMGLDPGLRTGVKVAVVDNTGKLLATDTIYPHTTGKAAAEVSLYKLIKQHNVELIAIGNGTASRETERFAK
DVLKQIKENKPDMLIPQTVVVSEAGASVYSASELAANEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDV
NQSQLARKLDAVVEDCVNAVGVDLNTASAALLARVAGMSKTLAQNIVAFRDENGRFNARSDLKKVPRLGPKAFEQCAGFM
RIVGGKNALDASSVHPEAYPVVEKILQATDSTLAELMGNATRIHQLNAKDFVDEQFGLPTVNDIFKELEKPGRDPRGEFK
TATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKVLEVDVQRKR
IALTMRLEDKPTDKPASGRNPQENRKNSEKSDRFSGNKSQHNQFANNAFADALKGWKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=813, Percent_Identity=32.4723247232472, Blast_Score=379, Evalue=1e-105,
Organism=Homo sapiens, GI27597090, Length=768, Percent_Identity=22.5260416666667, Blast_Score=113, Evalue=9e-25,
Organism=Escherichia coli, GI87082262, Length=755, Percent_Identity=71.1258278145695, Blast_Score=1083, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=40.7894736842105, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=719, Percent_Identity=27.6773296244784, Blast_Score=224, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI17552892, Length=662, Percent_Identity=22.9607250755287, Blast_Score=91, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6321552, Length=242, Percent_Identity=28.099173553719, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI62484314, Length=777, Percent_Identity=33.8481338481338, Blast_Score=385, Evalue=1e-107,
Organism=Drosophila melanogaster, GI24640080, Length=452, Percent_Identity=22.3451327433628, Blast_Score=85, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 86209; Mature: 86078

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELNTQISQIIATELSVGSHQILAAIKLLDEGNTIPFIARYRKEVTGGLDDTQLRHFET
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
RLIYLRELDDRRQTILKSIEDQGKLTDELRTKIETTESKTELEDLYLPYKPKRRTRGQIA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCEE
IESGLEPLADSLWNDPSQLPETLAETFVDAEKGVADVKSALDGARYILMERFSEDAELLA
HHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
KLRQYLTAYATLESKVIEGKEEEGEKFRDYFAHSEPFKTVPSHRALAMFRGRNEGVLSLS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEE
LNADPEAEEGARTSHCEEIIRQHLGVIFNQQPADKWREQVIAWTWKIKAALHLETELMGA
ECCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEEEEEEHHHHHHHH
LREKAEEEAIDVFARNLSALLMAAPAGAKNTMGLDPGLRTGVKVAVVDNTGKLLATDTIY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCC
PHTTGKAAAEVSLYKLIKQHNVELIAIGNGTASRETERFAKDVLKQIKENKPDMLIPQTV
CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCE
VVSEAGASVYSASELAANEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHD
EEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHC
VNQSQLARKLDAVVEDCVNAVGVDLNTASAALLARVAGMSKTLAQNIVAFRDENGRFNAR
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
SDLKKVPRLGPKAFEQCAGFMRIVGGKNALDASSVHPEAYPVVEKILQATDSTLAELMGN
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
ATRIHQLNAKDFVDEQFGLPTVNDIFKELEKPGRDPRGEFKTATFMDGVEDIKDLKVGMI
CHHEEECCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCEE
LEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKVLEVDVQRK
ECCHHHHHHHCCCEEEECCCCCCCEEEEEHHHHHHCCHHHHHHHCCEEEEEEEEEECCCC
RIALTMRLEDKPTDKPASGRNPQENRKNSEKSDRFSGNKSQHNQFANNAFADALKGWKK
EEEEEEEECCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SELNTQISQIIATELSVGSHQILAAIKLLDEGNTIPFIARYRKEVTGGLDDTQLRHFET
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
RLIYLRELDDRRQTILKSIEDQGKLTDELRTKIETTESKTELEDLYLPYKPKRRTRGQIA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCEE
IESGLEPLADSLWNDPSQLPETLAETFVDAEKGVADVKSALDGARYILMERFSEDAELLA
HHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
KLRQYLTAYATLESKVIEGKEEEGEKFRDYFAHSEPFKTVPSHRALAMFRGRNEGVLSLS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEE
LNADPEAEEGARTSHCEEIIRQHLGVIFNQQPADKWREQVIAWTWKIKAALHLETELMGA
ECCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEEEEEEHHHHHHHH
LREKAEEEAIDVFARNLSALLMAAPAGAKNTMGLDPGLRTGVKVAVVDNTGKLLATDTIY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCC
PHTTGKAAAEVSLYKLIKQHNVELIAIGNGTASRETERFAKDVLKQIKENKPDMLIPQTV
CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCE
VVSEAGASVYSASELAANEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHD
EEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHC
VNQSQLARKLDAVVEDCVNAVGVDLNTASAALLARVAGMSKTLAQNIVAFRDENGRFNAR
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
SDLKKVPRLGPKAFEQCAGFMRIVGGKNALDASSVHPEAYPVVEKILQATDSTLAELMGN
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
ATRIHQLNAKDFVDEQFGLPTVNDIFKELEKPGRDPRGEFKTATFMDGVEDIKDLKVGMI
CHHEEECCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCEE
LEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKVLEVDVQRK
ECCHHHHHHHCCCEEEECCCCCCCEEEEEHHHHHHCCHHHHHHHCCEEEEEEEEEECCCC
RIALTMRLEDKPTDKPASGRNPQENRKNSEKSDRFSGNKSQHNQFANNAFADALKGWKK
EEEEEEEECCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]