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The map label for this gene is rmuC [H]

Identifier: 126208616

GI number: 126208616

Start: 1321696

End: 1323330

Strand: Direct

Name: rmuC [H]

Synonym: APL_1146

Alternate gene names: 126208616

Gene position: 1321696-1323330 (Clockwise)

Preceding gene: 126208606

Following gene: 126208617

Centisome position: 58.11

GC content: 41.71

Gene sequence:

>1635_bases
ATGATTATTGACGAAATATGGTTTTATGTGGCGATTGCCGCGTTATTGATTATCGCTGTGTTTCTGTTTTTTCTGCAATC
ACGCTACCAACGTGATGCGTTTGAGCTTTCACAAGATTTGACCAAAGCACAAGCCGATCTCAGCCAAATGAATCAAAAAT
TTGAGCAACTTGCCGTTGAAAAAAATCAGATCGAACAATGGGCAACTCAATATAAAACACAAGCCCAAGCGGGTATTGAG
CGAATTAGCGAAAAAGAAGCGCAAATTAACCGCTTGCACAGCAAAATTGAAGAAGCGGAACAGCAAGAACAACAATTAGA
ACGCTATATCAATGAGTTAAAAGAGCGTATCGGCGCATTCCAAGCCAAGTCGGAAAGTTTAGAAGAACAATTACAATTTA
ATCAAAATGCGCTTTCGCATAAAGAACGTGAAAGCCAATCGCTTGTTGTCCAGCTTAGCCAGACGCAAAATGAATTAACC
GAATTGCGAACCTCACTTTCAGAAAAACAAGCGAATTTTGAAGCACAACAACGTAATTTTATCGAGGTAAAACAACAACT
TAATGTTGAGTTTCAACATTTGGCACAGCAAATTTTGGAAGAAAAAACCAAAAGTTTTACCGCGAGCAACCAATCTTCGT
TAGATGCCCTGTTAAAACCGTTTAAAGAACAAATCGAGGGTTTCCAAAAACGGGTAAATGAAGTGCATAGCGAATCGCTT
AAAGGCACGGCAAGTTTAGAAGCCGAACTGAAACGGGTACTACAAATCGGTGTGTCAATGTCGGAAGAAGCCCAAAACCT
AACTAATGCGTTAAAAGGTAACAATAAAATCGCCGGTAATTGGGGCGAAGTACAGCTTGAATCGGCACTACAGGCGGCGG
GATTATTAGCCGGTGAGCACTATGTGGCTCAAGAAAGTTTCCGAGATCAGGAGGGCAAACGCTTCGCGCCTGACTTTGTG
GTACATTTACCCGATCAAAAACACTTAATTATTGATAGTAAAGTATCGTTGCTGGCTTACGATCAAGCGGTCAGATCCGA
AGAAAATTTTGCAATTGCCCAAGCCTTAGATGAGCATTGTAAATCACTCCGTTCGCACATTGACGGCTTATCGAAAAAGA
ATTATAGCAGTTTGCAAGGGGTGAAAAGCCCGGATTTCGTATTGATGTTTATACCGATTGAGCCAGCTTATATTGAAGCG
ATGAAACACGATCCTCAGCTGTTTAATTACGGTTATGAACGTAATATCATTTTGGTTTCTTACACCACTCTAATGCCGAT
TTTACGCACCGTGGCAAATTTATGGCGAATTGAGCGAGGCAATGCCGAAGCACGTGAAATCAGTGAAAAAGCAGGCGAAA
TTTATAATCAAGTTTGTACCGTTGCCGACCGTTTGGCGAAATTGGGCAATACGCTCAATACGGTAAATAACCAGTATAAT
CAGACGGTAACCTCATTGGTTGGGCGCCAAGGCCTGGTCGGTAAAGTCGAACGCTTCCAGCAACTTTCCGCCAAAGCGAG
CCAAACGATGCCGGCGGTTGAGATGCTTACCAATGATTTTGATACCAATAAACTCACATTAATTGCAGAAAAGATTGAAG
ATAGCAATGCAGCAAACAATGAAGAAAGCCACTAA

Upstream 100 bases:

>100_bases
AGGGGAATTTCCGCCGATTTAGCAACGTTCTTTCACTTTTCATTTTTCGTCGGATTGCTATAATACTGTATATTTTTCTA
TTGGATTTAGGTTTACCTTT

Downstream 100 bases:

>100_bases
TTTATTAATTATCGATAACCACGATTCGTTTACTTTCAATCTGGTTGATCTGCTACGTAAAATCGGCGTGCCGATGAAAG
TGGTTTTAGTAGAACAATTA

Product: DNA recombination protein RmuC-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MIIDEIWFYVAIAALLIIAVFLFFLQSRYQRDAFELSQDLTKAQADLSQMNQKFEQLAVEKNQIEQWATQYKTQAQAGIE
RISEKEAQINRLHSKIEEAEQQEQQLERYINELKERIGAFQAKSESLEEQLQFNQNALSHKERESQSLVVQLSQTQNELT
ELRTSLSEKQANFEAQQRNFIEVKQQLNVEFQHLAQQILEEKTKSFTASNQSSLDALLKPFKEQIEGFQKRVNEVHSESL
KGTASLEAELKRVLQIGVSMSEEAQNLTNALKGNNKIAGNWGEVQLESALQAAGLLAGEHYVAQESFRDQEGKRFAPDFV
VHLPDQKHLIIDSKVSLLAYDQAVRSEENFAIAQALDEHCKSLRSHIDGLSKKNYSSLQGVKSPDFVLMFIPIEPAYIEA
MKHDPQLFNYGYERNIILVSYTTLMPILRTVANLWRIERGNAEAREISEKAGEIYNQVCTVADRLAKLGNTLNTVNNQYN
QTVTSLVGRQGLVGKVERFQQLSAKASQTMPAVEMLTNDFDTNKLTLIAEKIEDSNAANNEESH

Sequences:

>Translated_544_residues
MIIDEIWFYVAIAALLIIAVFLFFLQSRYQRDAFELSQDLTKAQADLSQMNQKFEQLAVEKNQIEQWATQYKTQAQAGIE
RISEKEAQINRLHSKIEEAEQQEQQLERYINELKERIGAFQAKSESLEEQLQFNQNALSHKERESQSLVVQLSQTQNELT
ELRTSLSEKQANFEAQQRNFIEVKQQLNVEFQHLAQQILEEKTKSFTASNQSSLDALLKPFKEQIEGFQKRVNEVHSESL
KGTASLEAELKRVLQIGVSMSEEAQNLTNALKGNNKIAGNWGEVQLESALQAAGLLAGEHYVAQESFRDQEGKRFAPDFV
VHLPDQKHLIIDSKVSLLAYDQAVRSEENFAIAQALDEHCKSLRSHIDGLSKKNYSSLQGVKSPDFVLMFIPIEPAYIEA
MKHDPQLFNYGYERNIILVSYTTLMPILRTVANLWRIERGNAEAREISEKAGEIYNQVCTVADRLAKLGNTLNTVNNQYN
QTVTSLVGRQGLVGKVERFQQLSAKASQTMPAVEMLTNDFDTNKLTLIAEKIEDSNAANNEESH
>Mature_544_residues
MIIDEIWFYVAIAALLIIAVFLFFLQSRYQRDAFELSQDLTKAQADLSQMNQKFEQLAVEKNQIEQWATQYKTQAQAGIE
RISEKEAQINRLHSKIEEAEQQEQQLERYINELKERIGAFQAKSESLEEQLQFNQNALSHKERESQSLVVQLSQTQNELT
ELRTSLSEKQANFEAQQRNFIEVKQQLNVEFQHLAQQILEEKTKSFTASNQSSLDALLKPFKEQIEGFQKRVNEVHSESL
KGTASLEAELKRVLQIGVSMSEEAQNLTNALKGNNKIAGNWGEVQLESALQAAGLLAGEHYVAQESFRDQEGKRFAPDFV
VHLPDQKHLIIDSKVSLLAYDQAVRSEENFAIAQALDEHCKSLRSHIDGLSKKNYSSLQGVKSPDFVLMFIPIEPAYIEA
MKHDPQLFNYGYERNIILVSYTTLMPILRTVANLWRIERGNAEAREISEKAGEIYNQVCTVADRLAKLGNTLNTVNNQYN
QTVTSLVGRQGLVGKVERFQQLSAKASQTMPAVEMLTNDFDTNKLTLIAEKIEDSNAANNEESH

Specific function: Involved in DNA recombination [H]

COG id: COG1322

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rmuC family [H]

Homologues:

Organism=Escherichia coli, GI1790266, Length=349, Percent_Identity=36.1031518624642, Blast_Score=254, Evalue=1e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003798 [H]

Pfam domain/function: PF02646 RmuC [H]

EC number: NA

Molecular weight: Translated: 61863; Mature: 61863

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIDEIWFYVAIAALLIIAVFLFFLQSRYQRDAFELSQDLTKAQADLSQMNQKFEQLAVE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNQIEQWATQYKTQAQAGIERISEKEAQINRLHSKIEEAEQQEQQLERYINELKERIGAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAKSESLEEQLQFNQNALSHKERESQSLVVQLSQTQNELTELRTSLSEKQANFEAQQRNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
IEVKQQLNVEFQHLAQQILEEKTKSFTASNQSSLDALLKPFKEQIEGFQKRVNEVHSESL
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KGTASLEAELKRVLQIGVSMSEEAQNLTNALKGNNKIAGNWGEVQLESALQAAGLLAGEH
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
YVAQESFRDQEGKRFAPDFVVHLPDQKHLIIDSKVSLLAYDQAVRSEENFAIAQALDEHC
HHHHHHHCCCCCCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHH
KSLRSHIDGLSKKNYSSLQGVKSPDFVLMFIPIEPAYIEAMKHDPQLFNYGYERNIILVS
HHHHHHHCCCCCCCHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHCCCCCCCEEEEE
YTTLMPILRTVANLWRIERGNAEAREISEKAGEIYNQVCTVADRLAKLGNTLNTVNNQYN
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTVTSLVGRQGLVGKVERFQQLSAKASQTMPAVEMLTNDFDTNKLTLIAEKIEDSNAANN
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC
EESH
CCCC
>Mature Secondary Structure
MIIDEIWFYVAIAALLIIAVFLFFLQSRYQRDAFELSQDLTKAQADLSQMNQKFEQLAVE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNQIEQWATQYKTQAQAGIERISEKEAQINRLHSKIEEAEQQEQQLERYINELKERIGAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAKSESLEEQLQFNQNALSHKERESQSLVVQLSQTQNELTELRTSLSEKQANFEAQQRNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
IEVKQQLNVEFQHLAQQILEEKTKSFTASNQSSLDALLKPFKEQIEGFQKRVNEVHSESL
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KGTASLEAELKRVLQIGVSMSEEAQNLTNALKGNNKIAGNWGEVQLESALQAAGLLAGEH
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
YVAQESFRDQEGKRFAPDFVVHLPDQKHLIIDSKVSLLAYDQAVRSEENFAIAQALDEHC
HHHHHHHCCCCCCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHH
KSLRSHIDGLSKKNYSSLQGVKSPDFVLMFIPIEPAYIEAMKHDPQLFNYGYERNIILVS
HHHHHHHCCCCCCCHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHCCCCCCCEEEEE
YTTLMPILRTVANLWRIERGNAEAREISEKAGEIYNQVCTVADRLAKLGNTLNTVNNQYN
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTVTSLVGRQGLVGKVERFQQLSAKASQTMPAVEMLTNDFDTNKLTLIAEKIEDSNAANN
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC
EESH
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]