Click here to switch to the map view.

The map label for this gene is strH [H]

Identifier: 126208568

GI number: 126208568

Start: 1267582

End: 1268715

Strand: Direct

Name: strH [H]

Synonym: APL_1096

Alternate gene names: 126208568

Gene position: 1267582-1268715 (Clockwise)

Preceding gene: 126208566

Following gene: 126208569

Centisome position: 55.73

GC content: 37.21

Gene sequence:

>1134_bases
ATGAAAAAAGCAATTACTTTATTTACATTATTATGCGCGGTACTTCTCTCATTCAGTACCGCAACTTATGCAAACGCTAT
GGACTTACCTAAAAAAGAAAGCGGTCTGACGTTAGATATCGCACGTCGTTTCTATACCGTTGATACGATAAAACAATTTA
TCGATACGATTCATCAGGCGGGCGGCACTTTTCTGCATTTACATTTTTCCGATCACGAGAATTATGCATTGGAAAGTTCT
TATTTGGAACAACGAGAAGAAAATGCGACCGAGAAAAACGGAACCTATTTCAATCCGAAAACAAATAAGCCGTTTCTCAC
TTATAAACAGCTCAATGAAATTATCTATTATGCCAAAGAACGAAATATTGAAATTGTGCCTGAAGTCGATAGCCCGAATC
ATATGACGGCGATTTTTGATCTTTTAACCCTTAAGCACGGAAAGGAATACGTAAAAGGGCTAAAATCGCCTTATATCGCC
GAGGAAATCGATATTAATAACCCCGAAGCGGTTGAAGTTATTAAAACCTTAATCGGTGAAGTGATCTATATTTTCGGACA
TTCAAGCCGGCATTTCCATATCGGCGGAGATGAATTTAGCTATGCGGTCGAAAATAATCATGAATTTATTCGGTATGTGA
ATACCTTAAATGATTTTATCAATTCCAAAGGGCTAATTACCCGTGTTTGGAATGACGGTTTGATCAAAAACAACTTAAGC
GAACTCAATAAAAACATTGAAATCACTTACTGGAGCTACGACGGTGACGCTCAAGCCAAAGAAGATATTCAATATCGACG
TGAAATAAGAGCCGATTTGCCCGAACTGCTGGCAAACGGTTTTAAGGTTTTAAACTATAATTCTTATTATTTATACTTTG
TGCCTAAATCCGGTTCTAATATTCACAATGACGGTAAATATGCGGCTGAAGACGTATTAAATAACTGGACATTAGGTAAA
TGGGACGGAAAAAACAGCTCAAATCACGTACAAAATACGCAGAATATTATCGGTTCTTCTTTGTCGATTTGGGGGGAACG
TTCCAGCGCATTAAATGAACAAACTATTCAGCAAGCCTCTAAAAATTTATTAAAAGCGGTGATCCAAAAAACTAATGATC
CGAAATCGCATTAG

Upstream 100 bases:

>100_bases
CGAATTCTCAACGCTTCGGCTCATTAGACAAGTAAAAAAATTGAGAATTATTTTCCGCAAAACGAGTCTATACTCTACCT
CTAAATTTTTAAACCTCATT

Downstream 100 bases:

>100_bases
AAAATCATTGGAAATTCTGCTACTATAGCCTCTCGACAAGCGGTCTCTTTTTGCAAAAAAATTGCAAATTCAGACCGCTT
ATTCTTTCGTGGTTCGCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKKAITLFTLLCAVLLSFSTATYANAMDLPKKESGLTLDIARRFYTVDTIKQFIDTIHQAGGTFLHLHFSDHENYALESS
YLEQREENATEKNGTYFNPKTNKPFLTYKQLNEIIYYAKERNIEIVPEVDSPNHMTAIFDLLTLKHGKEYVKGLKSPYIA
EEIDINNPEAVEVIKTLIGEVIYIFGHSSRHFHIGGDEFSYAVENNHEFIRYVNTLNDFINSKGLITRVWNDGLIKNNLS
ELNKNIEITYWSYDGDAQAKEDIQYRREIRADLPELLANGFKVLNYNSYYLYFVPKSGSNIHNDGKYAAEDVLNNWTLGK
WDGKNSSNHVQNTQNIIGSSLSIWGERSSALNEQTIQQASKNLLKAVIQKTNDPKSH

Sequences:

>Translated_377_residues
MKKAITLFTLLCAVLLSFSTATYANAMDLPKKESGLTLDIARRFYTVDTIKQFIDTIHQAGGTFLHLHFSDHENYALESS
YLEQREENATEKNGTYFNPKTNKPFLTYKQLNEIIYYAKERNIEIVPEVDSPNHMTAIFDLLTLKHGKEYVKGLKSPYIA
EEIDINNPEAVEVIKTLIGEVIYIFGHSSRHFHIGGDEFSYAVENNHEFIRYVNTLNDFINSKGLITRVWNDGLIKNNLS
ELNKNIEITYWSYDGDAQAKEDIQYRREIRADLPELLANGFKVLNYNSYYLYFVPKSGSNIHNDGKYAAEDVLNNWTLGK
WDGKNSSNHVQNTQNIIGSSLSIWGERSSALNEQTIQQASKNLLKAVIQKTNDPKSH
>Mature_377_residues
MKKAITLFTLLCAVLLSFSTATYANAMDLPKKESGLTLDIARRFYTVDTIKQFIDTIHQAGGTFLHLHFSDHENYALESS
YLEQREENATEKNGTYFNPKTNKPFLTYKQLNEIIYYAKERNIEIVPEVDSPNHMTAIFDLLTLKHGKEYVKGLKSPYIA
EEIDINNPEAVEVIKTLIGEVIYIFGHSSRHFHIGGDEFSYAVENNHEFIRYVNTLNDFINSKGLITRVWNDGLIKNNLS
ELNKNIEITYWSYDGDAQAKEDIQYRREIRADLPELLANGFKVLNYNSYYLYFVPKSGSNIHNDGKYAAEDVLNNWTLGK
WDGKNSSNHVQNTQNIIGSSLSIWGERSSALNEQTIQQASKNLLKAVIQKTNDPKSH

Specific function: Unknown

COG id: COG3525

COG function: function code G; N-acetyl-beta-hexosaminidase

Gene ontology:

Cell location: Secreted, cell wall; Peptidoglycan-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 G5 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011098
- InterPro:   IPR001540
- InterPro:   IPR015883
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR005877
- InterPro:   IPR019948
- InterPro:   IPR019931
- InterPro:   IPR001899 [H]

Pfam domain/function: PF07501 G5; PF00728 Glyco_hydro_20; PF00746 Gram_pos_anchor; PF04650 YSIRK_signal [H]

EC number: =3.2.1.52 [H]

Molecular weight: Translated: 43155; Mature: 43155

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAITLFTLLCAVLLSFSTATYANAMDLPKKESGLTLDIARRFYTVDTIKQFIDTIHQA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
GGTFLHLHFSDHENYALESSYLEQREENATEKNGTYFNPKTNKPFLTYKQLNEIIYYAKE
CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCEEEHHHHHHHHHHHHC
RNIEIVPEVDSPNHMTAIFDLLTLKHGKEYVKGLKSPYIAEEIDINNPEAVEVIKTLIGE
CCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHH
VIYIFGHSSRHFHIGGDEFSYAVENNHEFIRYVNTLNDFINSKGLITRVWNDGLIKNNLS
EEEEEECCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHCCHH
ELNKNIEITYWSYDGDAQAKEDIQYRREIRADLPELLANGFKVLNYNSYYLYFVPKSGSN
HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEEEECCCCC
IHNDGKYAAEDVLNNWTLGKWDGKNSSNHVQNTQNIIGSSLSIWGERSSALNEQTIQQAS
CCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHH
KNLLKAVIQKTNDPKSH
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKAITLFTLLCAVLLSFSTATYANAMDLPKKESGLTLDIARRFYTVDTIKQFIDTIHQA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
GGTFLHLHFSDHENYALESSYLEQREENATEKNGTYFNPKTNKPFLTYKQLNEIIYYAKE
CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCEEEHHHHHHHHHHHHC
RNIEIVPEVDSPNHMTAIFDLLTLKHGKEYVKGLKSPYIAEEIDINNPEAVEVIKTLIGE
CCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHH
VIYIFGHSSRHFHIGGDEFSYAVENNHEFIRYVNTLNDFINSKGLITRVWNDGLIKNNLS
EEEEEECCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHCCHH
ELNKNIEITYWSYDGDAQAKEDIQYRREIRADLPELLANGFKVLNYNSYYLYFVPKSGSN
HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEEEECCCCC
IHNDGKYAAEDVLNNWTLGKWDGKNSSNHVQNTQNIIGSSLSIWGERSSALNEQTIQQAS
CCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHH
KNLLKAVIQKTNDPKSH
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7721787; 11463916 [H]