Click here to switch to the map view.

The map label for this gene is ydcR [H]

Identifier: 126208566

GI number: 126208566

Start: 1264888

End: 1266276

Strand: Direct

Name: ydcR [H]

Synonym: APL_1094

Alternate gene names: 126208566

Gene position: 1264888-1266276 (Clockwise)

Preceding gene: 126208559

Following gene: 126208568

Centisome position: 55.61

GC content: 34.49

Gene sequence:

>1389_bases
ATGAAGAAAAAGACGAGAGTACAAGAAGTTTACGAATGGATAACGGATAAGATTGAGAGAGATATTTATTTACCTAGACA
AAAAATCCCTTCAATTCGCCAGTTGGCTCAAAAATTAGGTATATCGACATTTTCAGTTGCCCAAGGATATGATCTATTAG
TCTCAATGGGATATATTAAATCGGTCAGCGGCTCAGGCTTTTTTGTTTGTGAAAAGCAATACATATCACCCGAACTTAAT
TTAGCGCCGTCACTCATCAATAATGTTACCGATACCGGCTGGCTAATGCGCCATCTATTTAGTGAGCTGCCAAAAAATAA
AGCCCCGGGAAGCGGATTACTACCGGATGAGTGGCTAATTGATGCGGAAATCATTTCAAATGCAATTAGAAAATCCGCTA
AAGAAGTCAATAGTTTCATTTACTCATATGGGCATATTCAAGGTTACCACCCCCTACGAGAACTATTTTCAAAACAATTA
GATAATATAGGAATAAACATAAACCCCAATGCAATCATCACAATGCCCGGTGTTTCTTCCGCTATTCAAACCGTATTAAG
AGAAATTGTGAAAGCGGGTGATTATGTTATCGTTGATGATCCCAGTTGGTTTTGGTTATTAGGCTGCTTACACCAATTAA
ATATTAATGTTGTAAGCGTTCCTAGAGATAGTAGTGGACCTAATATCAATGAATTAGAAAATCTCTTTCAAACCTATAAG
CCGAAATTATATATTACGAACAGTATTCTAAATAATCCTACATCTTATAATATTTCGCCATCCATCATGTATAAAGTATT
AAATTTACTACATAAATATGATGCTTACTTATTGGAAGATGATATCTATAGCCATCTAGAAAGCTCAAGAAACACATTAC
GTTATGCCTCTTTAGATCAATTAGAACGTGTTTTTTATGTTACCGGCGTATCTAAGATACTCGGTGCAAATTGGCGAGTC
GGTTTTTTATGCACTCCGCAAAATTTTTTACAGCCTATTTTAAGACAGAAAATGCTATCTAATATGACCAGTACCGAATT
AACCGAAAGAGCGATTCATCACATTTGGCTTCATCCTCAATACAAAAAACATATTGAAGATATGAGATCAAAATTAACTA
AAAAACATGAATCTCTGAAGCAAGAATTGGATAATATAGGAATTGAATACCCGAAAGAAGGCAATATCGGGATATTTTTA
TGGATTAATACGTATTTAGATACAACCCAAATGGCTCTAGAAGCAAGTAAAGAGGGATTTTTACTTGCTCCGGGGTATTT
GTTTTCTCAACATTCTGATTTTTCTACTTACTTACGCTTAAATGTAACCCGAACCGATAAAGAATTTATTGATTGGCTAC
ACAAATATAAATTAAATCATCATATCTAA

Upstream 100 bases:

>100_bases
TAAATATACTAGATAAAATTAACTTACAACCTACACAATCATTACGCATAAGAGAATAACTGTATAGGAAGCTTTTCTAT
ACAATTTAAGTGAATATCAA

Downstream 100 bases:

>100_bases
AAAACCGCTTGTAGTGAGCTACAAGCGGTCCGATTTCTGAATGTTTTTACAAACTAGATGATTTCAACTTGTTCCGAACC
TTCACCTAGGTTTTCAATTT

Product: putative transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MKKKTRVQEVYEWITDKIERDIYLPRQKIPSIRQLAQKLGISTFSVAQGYDLLVSMGYIKSVSGSGFFVCEKQYISPELN
LAPSLINNVTDTGWLMRHLFSELPKNKAPGSGLLPDEWLIDAEIISNAIRKSAKEVNSFIYSYGHIQGYHPLRELFSKQL
DNIGININPNAIITMPGVSSAIQTVLREIVKAGDYVIVDDPSWFWLLGCLHQLNINVVSVPRDSSGPNINELENLFQTYK
PKLYITNSILNNPTSYNISPSIMYKVLNLLHKYDAYLLEDDIYSHLESSRNTLRYASLDQLERVFYVTGVSKILGANWRV
GFLCTPQNFLQPILRQKMLSNMTSTELTERAIHHIWLHPQYKKHIEDMRSKLTKKHESLKQELDNIGIEYPKEGNIGIFL
WINTYLDTTQMALEASKEGFLLAPGYLFSQHSDFSTYLRLNVTRTDKEFIDWLHKYKLNHHI

Sequences:

>Translated_462_residues
MKKKTRVQEVYEWITDKIERDIYLPRQKIPSIRQLAQKLGISTFSVAQGYDLLVSMGYIKSVSGSGFFVCEKQYISPELN
LAPSLINNVTDTGWLMRHLFSELPKNKAPGSGLLPDEWLIDAEIISNAIRKSAKEVNSFIYSYGHIQGYHPLRELFSKQL
DNIGININPNAIITMPGVSSAIQTVLREIVKAGDYVIVDDPSWFWLLGCLHQLNINVVSVPRDSSGPNINELENLFQTYK
PKLYITNSILNNPTSYNISPSIMYKVLNLLHKYDAYLLEDDIYSHLESSRNTLRYASLDQLERVFYVTGVSKILGANWRV
GFLCTPQNFLQPILRQKMLSNMTSTELTERAIHHIWLHPQYKKHIEDMRSKLTKKHESLKQELDNIGIEYPKEGNIGIFL
WINTYLDTTQMALEASKEGFLLAPGYLFSQHSDFSTYLRLNVTRTDKEFIDWLHKYKLNHHI
>Mature_462_residues
MKKKTRVQEVYEWITDKIERDIYLPRQKIPSIRQLAQKLGISTFSVAQGYDLLVSMGYIKSVSGSGFFVCEKQYISPELN
LAPSLINNVTDTGWLMRHLFSELPKNKAPGSGLLPDEWLIDAEIISNAIRKSAKEVNSFIYSYGHIQGYHPLRELFSKQL
DNIGININPNAIITMPGVSSAIQTVLREIVKAGDYVIVDDPSWFWLLGCLHQLNINVVSVPRDSSGPNINELENLFQTYK
PKLYITNSILNNPTSYNISPSIMYKVLNLLHKYDAYLLEDDIYSHLESSRNTLRYASLDQLERVFYVTGVSKILGANWRV
GFLCTPQNFLQPILRQKMLSNMTSTELTERAIHHIWLHPQYKKHIEDMRSKLTKKHESLKQELDNIGIEYPKEGNIGIFL
WINTYLDTTQMALEASKEGFLLAPGYLFSQHSDFSTYLRLNVTRTDKEFIDWLHKYKLNHHI

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=296, Percent_Identity=25.6756756756757, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI33469970, Length=296, Percent_Identity=25.6756756756757, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI1787710, Length=454, Percent_Identity=25.3303964757709, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1790797, Length=456, Percent_Identity=24.5614035087719, Blast_Score=126, Evalue=3e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53254; Mature: 53254

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKTRVQEVYEWITDKIERDIYLPRQKIPSIRQLAQKLGISTFSVAQGYDLLVSMGYIK
CCCHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHH
SVSGSGFFVCEKQYISPELNLAPSLINNVTDTGWLMRHLFSELPKNKAPGSGLLPDEWLI
CCCCCEEEEEEHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
DAEIISNAIRKSAKEVNSFIYSYGHIQGYHPLRELFSKQLDNIGININPNAIITMPGVSS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCEEEECCCHHH
AIQTVLREIVKAGDYVIVDDPSWFWLLGCLHQLNINVVSVPRDSSGPNINELENLFQTYK
HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHC
PKLYITNSILNNPTSYNISPSIMYKVLNLLHKYDAYLLEDDIYSHLESSRNTLRYASLDQ
CCEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHH
LERVFYVTGVSKILGANWRVGFLCTPQNFLQPILRQKMLSNMTSTELTERAIHHIWLHPQ
HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH
YKKHIEDMRSKLTKKHESLKQELDNIGIEYPKEGNIGIFLWINTYLDTTQMALEASKEGF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCCE
LLAPGYLFSQHSDFSTYLRLNVTRTDKEFIDWLHKYKLNHHI
EEECCHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKKTRVQEVYEWITDKIERDIYLPRQKIPSIRQLAQKLGISTFSVAQGYDLLVSMGYIK
CCCHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHH
SVSGSGFFVCEKQYISPELNLAPSLINNVTDTGWLMRHLFSELPKNKAPGSGLLPDEWLI
CCCCCEEEEEEHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
DAEIISNAIRKSAKEVNSFIYSYGHIQGYHPLRELFSKQLDNIGININPNAIITMPGVSS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCEEEECCCHHH
AIQTVLREIVKAGDYVIVDDPSWFWLLGCLHQLNINVVSVPRDSSGPNINELENLFQTYK
HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHC
PKLYITNSILNNPTSYNISPSIMYKVLNLLHKYDAYLLEDDIYSHLESSRNTLRYASLDQ
CCEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHH
LERVFYVTGVSKILGANWRVGFLCTPQNFLQPILRQKMLSNMTSTELTERAIHHIWLHPQ
HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH
YKKHIEDMRSKLTKKHESLKQELDNIGIEYPKEGNIGIFLWINTYLDTTQMALEASKEGF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCCE
LLAPGYLFSQHSDFSTYLRLNVTRTDKEFIDWLHKYKLNHHI
EEECCHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]