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The map label for this gene is yihI

Identifier: 126208439

GI number: 126208439

Start: 1118087

End: 1118665

Strand: Reverse

Name: yihI

Synonym: APL_0965

Alternate gene names: 126208439

Gene position: 1118665-1118087 (Counterclockwise)

Preceding gene: 126208440

Following gene: 126208438

Centisome position: 49.18

GC content: 40.59

Gene sequence:

>579_bases
ATGAGTCGCACTAAAAAAACACGTCGTATTACCGACATTATGCCTGCGCGAAAAGCAGATAAAAAACCGGAACAGCCTAA
ATTAAGCGGCGGTAAAAATCGTAAGTCTACCCGTTACGAACTGGATGCAAAAGCCCGTGAAGAAAAGAAAAAACGTAAAC
ACAAAGGCTTGCCGACCGGTTCGCGTAATGTTGATCCGGCGGAGCAGAAAAAAGCGGCGGTAAAAGAAGTGAAAGATCCG
CGTATCGGTAGCCGTAAAAAAATTCCTTTAATGGTGGAGTTTGTCAATAAACCGGAAAAAGGACAAATTATTAAACCGGT
TGCCATGGAAGAATATAAACCGCATTTATCGCCGGAATTAGAACTGGAACAGTTGGAAAATAATGAGATCTTAAACCAAT
TATTAGACGAAATCGAAGCGGGTAAAACCTTATCGGCGAAAGATCAAAAATTCGTAGACGAATGTTTGGATCGTATCGAT
GAGTTAATGACCGAATTAGGTATTCAAGATGAAGACGAAGATAACGGGGATGCGTTGCTTCGCCAATTTGAAACCATGGA
CATTAATCAATTTAGATAA

Upstream 100 bases:

>100_bases
TCTCAATGAATCCGACCGCTATTTTCATTTCTTCTCTGTTCAGCAAATCAGATTCCTTGTAGAATAATCGTTTAATTTTT
TATAGCAAAGAATAGATAGT

Downstream 100 bases:

>100_bases
GACGATTAAAAAACTATGATTCGATTTTTTCTCCTTATCCTTGCGATCTTAGTCGTGCTTTCGATGGCGGGTTACGCTGT
CTATTTAATGTTGAAATTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSRTKKTRRITDIMPARKADKKPEQPKLSGGKNRKSTRYELDAKAREEKKKRKHKGLPTGSRNVDPAEQKKAAVKEVKDP
RIGSRKKIPLMVEFVNKPEKGQIIKPVAMEEYKPHLSPELELEQLENNEILNQLLDEIEAGKTLSAKDQKFVDECLDRID
ELMTELGIQDEDEDNGDALLRQFETMDINQFR

Sequences:

>Translated_192_residues
MSRTKKTRRITDIMPARKADKKPEQPKLSGGKNRKSTRYELDAKAREEKKKRKHKGLPTGSRNVDPAEQKKAAVKEVKDP
RIGSRKKIPLMVEFVNKPEKGQIIKPVAMEEYKPHLSPELELEQLENNEILNQLLDEIEAGKTLSAKDQKFVDECLDRID
ELMTELGIQDEDEDNGDALLRQFETMDINQFR
>Mature_191_residues
SRTKKTRRITDIMPARKADKKPEQPKLSGGKNRKSTRYELDAKAREEKKKRKHKGLPTGSRNVDPAEQKKAAVKEVKDPR
IGSRKKIPLMVEFVNKPEKGQIIKPVAMEEYKPHLSPELELEQLENNEILNQLLDEIEAGKTLSAKDQKFVDECLDRIDE
LMTELGIQDEDEDNGDALLRQFETMDINQFR

Specific function: A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis

COG id: COG3078

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YihI family

Homologues:

Organism=Escherichia coli, GI1790297, Length=139, Percent_Identity=46.0431654676259, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIHI_ACTP2 (A3N0X3)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001053664.1
- STRING:   A3N0X3
- GeneID:   4849317
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_0965
- eggNOG:   COG3078
- HOGENOM:   HBG303443
- OMA:   AQKKDPR
- ProtClustDB:   PRK05244
- BioCyc:   APLE416269:APL_0965-MONOMER
- HAMAP:   MF_01058
- InterPro:   IPR007336

Pfam domain/function: PF04220 DUF414

EC number: NA

Molecular weight: Translated: 22152; Mature: 22020

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTKKTRRITDIMPARKADKKPEQPKLSGGKNRKSTRYELDAKAREEKKKRKHKGLPTG
CCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
SRNVDPAEQKKAAVKEVKDPRIGSRKKIPLMVEFVNKPEKGQIIKPVAMEEYKPHLSPEL
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCEECCHHHHHHCCCCCCCC
ELEQLENNEILNQLLDEIEAGKTLSAKDQKFVDECLDRIDELMTELGIQDEDEDNGDALL
HHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
RQFETMDINQFR
HHHHHCCHHCCC
>Mature Secondary Structure 
SRTKKTRRITDIMPARKADKKPEQPKLSGGKNRKSTRYELDAKAREEKKKRKHKGLPTG
CCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
SRNVDPAEQKKAAVKEVKDPRIGSRKKIPLMVEFVNKPEKGQIIKPVAMEEYKPHLSPEL
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCEECCHHHHHHCCCCCCCC
ELEQLENNEILNQLLDEIEAGKTLSAKDQKFVDECLDRIDELMTELGIQDEDEDNGDALL
HHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
RQFETMDINQFR
HHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA