Click here to switch to the map view.

The map label for this gene is srpC [H]

Identifier: 126208316

GI number: 126208316

Start: 974597

End: 975991

Strand: Direct

Name: srpC [H]

Synonym: APL_0840

Alternate gene names: 126208316

Gene position: 974597-975991 (Clockwise)

Preceding gene: 126208315

Following gene: 126208319

Centisome position: 42.85

GC content: 41.0

Gene sequence:

>1395_bases
ATGAAGATTGAGAAATATACCTCTTTTGCAATTTTTTGCTTAATTTTGACCGCTTGTCACAATCAAGACGTTGCCAAATT
GCAGTCCGATATTGAATTACCTGCACAATTCGAATATGCCAATACGGCTAATAAGGTGACAAATATCCGCCAATGGTGGA
AAAACTGGCAAGATCCGCAACTCACCGCATTAATTGAGCAAGGGCTGCAACACAATTTAGATATTAAACTCGCGCAAGCT
CGCCTTGCCGAAACGCAAGCCTATGCAGACTATAGACAAGCCGACCAAGGCATTAATATTGGTGCGAGCGGTTCAACAGG
TGCCGGCGTTAGTGATGTAAATTTAGATAGAGTTAATCCCGACCGTAAAAAAATATCCGATATTTATGGCGGTATTAATT
TATCTTGGGAACTTGATTTCTTCGGCAAAAAACAAAGTGAAGCGGATAAAGCAACCTCACTTGCATTGGCGCAACAAGAA
CAAATTTATGCCGCTCAAATGCTGATTACCGGCGAAATTGCCAATAACTATTTTCGTATAATCGCTACCGACAAGCAGAA
TAATAATCTCACGCAGCAACTTACCGCTCTGCAAGCGTTTAAACGTTATATCCAAGGACGATTTAACGCAGGTCAAGCCA
CTGCTTATGAACTGAATGAAATTGACGGACAAATCAGTGCGATACAAGCCAAACAATCGACATTATCCGCACAAGCGGAC
GAATTTCAGCGAAATATCGCTATTTTAATCGGTAAAACTCCGCAAGCTTTCCGGTTACAAAAAAACCGTAATGCTTTAAT
TAAAATACCGAATACGCCAAGCGGTACGCAGCCTAGCAGCTTACTCGATCATCGCCCCGATTTACGAGCGGCAAAGCAAC
AAGTGCAAGCACAAGCGGCGAATTTAGCCGGTAAACAAGCGGATCTTTACCCTCGTTTTGATATTACTTTTCAAGGTCAA
GGCGGCTATTTAAAACTGGATCAAGACTTAGGTAATATCTCGTCTTTAGCCGGATTGGCAAGTCTCGGAGTACAATTGCC
TATTTTTACCAATGGTAGAATCGCCGCTAATATTGAAGCTGCGCAAGCAAGTTTAAAAGCCGCTTTAATTCAATATGACA
AAACGCTTTTAACCGCTTTAGCCGAAGTGGATTCCGCCTATCAACAACAATATGCGTTAAATAATCAGAATCACCTCTTA
CAAAAGTATTACCAACAAGCCAATAAGCAAGCGATTGATTCGGAAAAACTGTTTAAATATGGCGATAAAACGTTAGATGT
GGCACTTCGTGCTAAAATTACCGCATATAGCACACAAGAAAAGTTGATTCAATCACAACTCTCACAAGCACAAAATTTGA
TTCGTTTATATAAATCGATTGGGGGCGGTTGGTAG

Upstream 100 bases:

>100_bases
TTAGCTAAAATGGCAATAGTGGGAGCTCTGTTTTTAAGCCCTGCCCTCTATCAATTTAAATCAATGCTCTCCAAACAGGG
ATAAGAATATAGGAACAACT

Downstream 100 bases:

>100_bases
AATCTATACATTTCGAACGGAGCAATAAATACAAAACAAAAAAGAGATCCGAAGATCCCTTTTTTTATGTCGCTGGATTA
GCTATTTAATGCTCTTAAAA

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MKIEKYTSFAIFCLILTACHNQDVAKLQSDIELPAQFEYANTANKVTNIRQWWKNWQDPQLTALIEQGLQHNLDIKLAQA
RLAETQAYADYRQADQGINIGASGSTGAGVSDVNLDRVNPDRKKISDIYGGINLSWELDFFGKKQSEADKATSLALAQQE
QIYAAQMLITGEIANNYFRIIATDKQNNNLTQQLTALQAFKRYIQGRFNAGQATAYELNEIDGQISAIQAKQSTLSAQAD
EFQRNIAILIGKTPQAFRLQKNRNALIKIPNTPSGTQPSSLLDHRPDLRAAKQQVQAQAANLAGKQADLYPRFDITFQGQ
GGYLKLDQDLGNISSLAGLASLGVQLPIFTNGRIAANIEAAQASLKAALIQYDKTLLTALAEVDSAYQQQYALNNQNHLL
QKYYQQANKQAIDSEKLFKYGDKTLDVALRAKITAYSTQEKLIQSQLSQAQNLIRLYKSIGGGW

Sequences:

>Translated_464_residues
MKIEKYTSFAIFCLILTACHNQDVAKLQSDIELPAQFEYANTANKVTNIRQWWKNWQDPQLTALIEQGLQHNLDIKLAQA
RLAETQAYADYRQADQGINIGASGSTGAGVSDVNLDRVNPDRKKISDIYGGINLSWELDFFGKKQSEADKATSLALAQQE
QIYAAQMLITGEIANNYFRIIATDKQNNNLTQQLTALQAFKRYIQGRFNAGQATAYELNEIDGQISAIQAKQSTLSAQAD
EFQRNIAILIGKTPQAFRLQKNRNALIKIPNTPSGTQPSSLLDHRPDLRAAKQQVQAQAANLAGKQADLYPRFDITFQGQ
GGYLKLDQDLGNISSLAGLASLGVQLPIFTNGRIAANIEAAQASLKAALIQYDKTLLTALAEVDSAYQQQYALNNQNHLL
QKYYQQANKQAIDSEKLFKYGDKTLDVALRAKITAYSTQEKLIQSQLSQAQNLIRLYKSIGGGW
>Mature_464_residues
MKIEKYTSFAIFCLILTACHNQDVAKLQSDIELPAQFEYANTANKVTNIRQWWKNWQDPQLTALIEQGLQHNLDIKLAQA
RLAETQAYADYRQADQGINIGASGSTGAGVSDVNLDRVNPDRKKISDIYGGINLSWELDFFGKKQSEADKATSLALAQQE
QIYAAQMLITGEIANNYFRIIATDKQNNNLTQQLTALQAFKRYIQGRFNAGQATAYELNEIDGQISAIQAKQSTLSAQAD
EFQRNIAILIGKTPQAFRLQKNRNALIKIPNTPSGTQPSSLLDHRPDLRAAKQQVQAQAANLAGKQADLYPRFDITFQGQ
GGYLKLDQDLGNISSLAGLASLGVQLPIFTNGRIAANIEAAQASLKAALIQYDKTLLTALAEVDSAYQQQYALNNQNHLL
QKYYQQANKQAIDSEKLFKYGDKTLDVALRAKITAYSTQEKLIQSQLSQAQNLIRLYKSIGGGW

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=472, Percent_Identity=25.4237288135593, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI2367348, Length=432, Percent_Identity=23.1481481481481, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 51458; Mature: 51458

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEKYTSFAIFCLILTACHNQDVAKLQSDIELPAQFEYANTANKVTNIRQWWKNWQDPQ
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCCCH
LTALIEQGLQHNLDIKLAQARLAETQAYADYRQADQGINIGASGSTGAGVSDVNLDRVNP
HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
DRKKISDIYGGINLSWELDFFGKKQSEADKATSLALAQQEQIYAAQMLITGEIANNYFRI
HHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEE
IATDKQNNNLTQQLTALQAFKRYIQGRFNAGQATAYELNEIDGQISAIQAKQSTLSAQAD
EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHH
EFQRNIAILIGKTPQAFRLQKNRNALIKIPNTPSGTQPSSLLDHRPDLRAAKQQVQAQAA
HHHCCEEEEEECCCHHHEEECCCCCEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHH
NLAGKQADLYPRFDITFQGQGGYLKLDQDLGNISSLAGLASLGVQLPIFTNGRIAANIEA
HHCCCCCCCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCEEEEEHHH
AQASLKAALIQYDKTLLTALAEVDSAYQQQYALNNQNHLLQKYYQQANKQAIDSEKLFKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHC
GDKTLDVALRAKITAYSTQEKLIQSQLSQAQNLIRLYKSIGGGW
CCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKIEKYTSFAIFCLILTACHNQDVAKLQSDIELPAQFEYANTANKVTNIRQWWKNWQDPQ
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCCCH
LTALIEQGLQHNLDIKLAQARLAETQAYADYRQADQGINIGASGSTGAGVSDVNLDRVNP
HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
DRKKISDIYGGINLSWELDFFGKKQSEADKATSLALAQQEQIYAAQMLITGEIANNYFRI
HHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEE
IATDKQNNNLTQQLTALQAFKRYIQGRFNAGQATAYELNEIDGQISAIQAKQSTLSAQAD
EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHH
EFQRNIAILIGKTPQAFRLQKNRNALIKIPNTPSGTQPSSLLDHRPDLRAAKQQVQAQAA
HHHCCEEEEEECCCHHHEEECCCCCEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHH
NLAGKQADLYPRFDITFQGQGGYLKLDQDLGNISSLAGLASLGVQLPIFTNGRIAANIEA
HHCCCCCCCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCEEEEEHHH
AQASLKAALIQYDKTLLTALAEVDSAYQQQYALNNQNHLLQKYYQQANKQAIDSEKLFKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHC
GDKTLDVALRAKITAYSTQEKLIQSQLSQAQNLIRLYKSIGGGW
CCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]