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The map label for this gene is yggA [C]

Identifier: 126208309

GI number: 126208309

Start: 966885

End: 967520

Strand: Reverse

Name: yggA [C]

Synonym: APL_0833

Alternate gene names: 126208309

Gene position: 967520-966885 (Counterclockwise)

Preceding gene: 126208312

Following gene: 126208307

Centisome position: 42.54

GC content: 40.25

Gene sequence:

>636_bases
ATGGACGTTTTTATTCAAGGTTTTATTGTGTGCTTCGGGTTGATTGTGTCAATCGGTGCGCAAAATGCTTTTTTACTGAA
ACAAGGTATCTTAAAACAGAACGTATTTTGGGTCGCTTTACTCTGTTTTTTAGGTGATGTATTTTTAATGACGTTAGGTG
TACTAGGGTTAGGTTCCATCGTAGCGAATTTGCCTATGTTAAGTTTAGCCATCGCTTTACTGGGAGCCTGTTTCTTATTT
ACCTACGGCAGTCGCTCGTTTATCAGTATTTTCAAGAGCGTAGAAGCACTGAAAGCAAGTAATGAAAATGCGACGAGTTT
GAAAAGAGCATTGATGATTACCTTTGCGATTACTTTTTTAAATCCGCACGTGTACATCGATACGGTAGTGATTTTGGGCG
GAATCGGCGGGCATTTGGATTTTGACGGCAAAATGGCGTTTCTTGCCGGCGCATTAAGTTGTTCGTTCTTATGGTTTTTT
GGTGTCGGTTACGGAGCCGGTTTTCTATCGCCTTATTTTGAAAAGCGCAGAACATGGCAAATTTTAGATTTTCTTACCGG
TGTGATTATGTATGCGATTGCAATCAGTTTGACGGCATATGCTTTTCAGCGGGCTAAACAAATTTTTGCTTGGTAA

Upstream 100 bases:

>100_bases
ATTCATGCTCAAAGAAAAGGATAAAATTCGGGAGATTATACCGCATTTTTGTAAAATTTTGCGTATAATCGACCGCTTGT
GGGGTCAATCGAGAGGAAAA

Downstream 100 bases:

>100_bases
GCGGTTAAATTTTATTGAATTTTTGCAAAAAGAAACGCTCGGAGTTTTGGCTTCGAGCGTTTTTGTTTGAGGAACAAACT
AAATTATAAATAGAATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MDVFIQGFIVCFGLIVSIGAQNAFLLKQGILKQNVFWVALLCFLGDVFLMTLGVLGLGSIVANLPMLSLAIALLGACFLF
TYGSRSFISIFKSVEALKASNENATSLKRALMITFAITFLNPHVYIDTVVILGGIGGHLDFDGKMAFLAGALSCSFLWFF
GVGYGAGFLSPYFEKRRTWQILDFLTGVIMYAIAISLTAYAFQRAKQIFAW

Sequences:

>Translated_211_residues
MDVFIQGFIVCFGLIVSIGAQNAFLLKQGILKQNVFWVALLCFLGDVFLMTLGVLGLGSIVANLPMLSLAIALLGACFLF
TYGSRSFISIFKSVEALKASNENATSLKRALMITFAITFLNPHVYIDTVVILGGIGGHLDFDGKMAFLAGALSCSFLWFF
GVGYGAGFLSPYFEKRRTWQILDFLTGVIMYAIAISLTAYAFQRAKQIFAW
>Mature_211_residues
MDVFIQGFIVCFGLIVSIGAQNAFLLKQGILKQNVFWVALLCFLGDVFLMTLGVLGLGSIVANLPMLSLAIALLGACFLF
TYGSRSFISIFKSVEALKASNENATSLKRALMITFAITFLNPHVYIDTVVILGGIGGHLDFDGKMAFLAGALSCSFLWFF
GVGYGAGFLSPYFEKRRTWQILDFLTGVIMYAIAISLTAYAFQRAKQIFAW

Specific function: Unknown

COG id: COG1279

COG function: function code R; Lysine efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LysE/ArgO transporter (TC 2.A.75) family [H]

Homologues:

Organism=Escherichia coli, GI1789290, Length=207, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004777
- InterPro:   IPR001123 [H]

Pfam domain/function: PF01810 LysE [H]

EC number: NA

Molecular weight: Translated: 23095; Mature: 23095

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVFIQGFIVCFGLIVSIGAQNAFLLKQGILKQNVFWVALLCFLGDVFLMTLGVLGLGSI
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VANLPMLSLAIALLGACFLFTYGSRSFISIFKSVEALKASNENATSLKRALMITFAITFL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
NPHVYIDTVVILGGIGGHLDFDGKMAFLAGALSCSFLWFFGVGYGAGFLSPYFEKRRTWQ
CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
ILDFLTGVIMYAIAISLTAYAFQRAKQIFAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDVFIQGFIVCFGLIVSIGAQNAFLLKQGILKQNVFWVALLCFLGDVFLMTLGVLGLGSI
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VANLPMLSLAIALLGACFLFTYGSRSFISIFKSVEALKASNENATSLKRALMITFAITFL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
NPHVYIDTVVILGGIGGHLDFDGKMAFLAGALSCSFLWFFGVGYGAGFLSPYFEKRRTWQ
CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
ILDFLTGVIMYAIAISLTAYAFQRAKQIFAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]