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The map label for this gene is ybeY [C]

Identifier: 126208174

GI number: 126208174

Start: 793634

End: 794125

Strand: Direct

Name: ybeY [C]

Synonym: APL_0694

Alternate gene names: 126208174

Gene position: 793634-794125 (Clockwise)

Preceding gene: 126208173

Following gene: 126208175

Centisome position: 34.89

GC content: 42.28

Gene sequence:

>492_bases
ATGACAACACCAATTATTGATTTACAAATCGCTGCTGAGAACAGCGAAAATCTCCCGTCTTTAGCACAATTTACCCAATG
GGTGCAACGTGCGTTAGCACACGAGGCACAAACCGAAGATTTCCCTGAAACGGAAATCACGATTCGTATCGTGGATGAAG
CGGAAAGCTACGAATTAAACTTAACCTATCGTGGTAAAGACAAACCGACCAATGTGCTTTCGTTTCCGTTTGAAGTGCCT
GAAGGCATTGAATTGCCGTTATTAGGTGATCTGATTATTTGCCGTCAAGTGGTAGAAAAAGAAGCGCAAGAGCAACAAAT
CTCCTTAGAATCGCACTGGGCACACTTAGCGATTCACGGCACGCTACACTTACTCGGTTACGACCATATTGAAGATGCGG
AAGCGGAAGAAATGGAAGGTTTAGAAACCGAGATTATGCAAAGTTTAGGTTTTGAAGATCCGTATATTTCAGAAAAAGTG
ATTGAAGAATAA

Upstream 100 bases:

>100_bases
AAGCGGATAAATGGCAATGAATCACGCCCTTAGATTCACGGAATGTGTCAGAAAGTTTATAATATTCGACAACATTCTGT
TTTTTATATATTGAGCATTT

Downstream 100 bases:

>100_bases
TGCGTAAACTGGTGATTTTAGCTGAAATGCCTCCGCTTGACGGGGGCATTGTTATTCATAGCGGCAATATCTCCCAAGCC
AAACAGTATTTGGGGCAAGA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MTTPIIDLQIAAENSENLPSLAQFTQWVQRALAHEAQTEDFPETEITIRIVDEAESYELNLTYRGKDKPTNVLSFPFEVP
EGIELPLLGDLIICRQVVEKEAQEQQISLESHWAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPYISEKV
IEE

Sequences:

>Translated_163_residues
MTTPIIDLQIAAENSENLPSLAQFTQWVQRALAHEAQTEDFPETEITIRIVDEAESYELNLTYRGKDKPTNVLSFPFEVP
EGIELPLLGDLIICRQVVEKEAQEQQISLESHWAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPYISEKV
IEE
>Mature_162_residues
TTPIIDLQIAAENSENLPSLAQFTQWVQRALAHEAQTEDFPETEITIRIVDEAESYELNLTYRGKDKPTNVLSFPFEVPE
GIELPLLGDLIICRQVVEKEAQEQQISLESHWAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPYISEKVI
EE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=159, Percent_Identity=65.4088050314465, Blast_Score=200, Evalue=3e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_ACTP2 (A3N058)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001053399.1
- ProteinModelPortal:   A3N058
- SMR:   A3N058
- STRING:   A3N058
- GeneID:   4849394
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_0694
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- PhylomeDB:   A3N058
- ProtClustDB:   PRK00016
- BioCyc:   APLE416269:APL_0694-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18546; Mature: 18415

Theoretical pI: Translated: 3.89; Mature: 3.89

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPIIDLQIAAENSENLPSLAQFTQWVQRALAHEAQTEDFPETEITIRIVDEAESYELN
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEE
LTYRGKDKPTNVLSFPFEVPEGIELPLLGDLIICRQVVEKEAQEQQISLESHWAHLAIHG
EEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEE
TLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPYISEKVIEE
EEEEEECCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCHHHHCC
>Mature Secondary Structure 
TTPIIDLQIAAENSENLPSLAQFTQWVQRALAHEAQTEDFPETEITIRIVDEAESYELN
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEE
LTYRGKDKPTNVLSFPFEVPEGIELPLLGDLIICRQVVEKEAQEQQISLESHWAHLAIHG
EEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEE
TLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPYISEKVIEE
EEEEEECCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA