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The map label for this gene is csrA

Identifier: 126208133

GI number: 126208133

Start: 746931

End: 747125

Strand: Reverse

Name: csrA

Synonym: APL_0653

Alternate gene names: 126208133

Gene position: 747125-746931 (Counterclockwise)

Preceding gene: 126208134

Following gene: 126208132

Centisome position: 32.85

GC content: 38.46

Gene sequence:

>195_bases
ATGCTTATACTCACTCGTAAAATTGGGGAAAGTTTACTAATAGGAGATAATGTTGAGATTACCGTTCTCAGCGTTCGAGG
CAATCAAGTTAAATTAGGTGTGAATGCGCCGAAAGAAGTTTCTGTTCATCGAGAAGAAATTTATCAAAGAATCAAAGCAT
TAGCGGATGATGTCGCTAGTGACACGCAACAGTAA

Upstream 100 bases:

>100_bases
AATGGATTCAGGCAAAACTTTAATTAAATTATTAGGCAAGATCTACGGATTGATCTTGCCGTAAGTTCTAATTTTTAGAG
CTTTTGACTCGGGAGGCTAT

Downstream 100 bases:

>100_bases
ATATTTTTATCACTAACAGAGTAAGGACTAATCTATGAGTAAACTCACTTGTTTTAAAGCCTATGATATTCGCGGTCAAT
TAGGCACAGAATTGAATACG

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 64; Mature: 64

Protein sequence:

>64_residues
MLILTRKIGESLLIGDNVEITVLSVRGNQVKLGVNAPKEVSVHREEIYQRIKALADDVASDTQQ

Sequences:

>Translated_64_residues
MLILTRKIGESLLIGDNVEITVLSVRGNQVKLGVNAPKEVSVHREEIYQRIKALADDVASDTQQ
>Mature_64_residues
MLILTRKIGESLLIGDNVEITVLSVRGNQVKLGVNAPKEVSVHREEIYQRIKALADDVASDTQQ

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=53, Percent_Identity=77.3584905660377, Blast_Score=92, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_ACTP2 (A3N017)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001053358.1
- ProteinModelPortal:   A3N017
- SMR:   A3N017
- STRING:   A3N017
- GeneID:   4849837
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_0653
- eggNOG:   COG1551
- HOGENOM:   HBG724655
- OMA:   ISIHREE
- PhylomeDB:   A3N017
- ProtClustDB:   PRK01712
- BioCyc:   APLE416269:APL_0653-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 7073; Mature: 7073

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRKIGESLLIGDNVEITVLSVRGNQVKLGVNAPKEVSVHREEIYQRIKALADDVAS
CEEEECCCCCEEEECCCCEEEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
DTQQ
CCCC
>Mature Secondary Structure
MLILTRKIGESLLIGDNVEITVLSVRGNQVKLGVNAPKEVSVHREEIYQRIKALADDVAS
CEEEECCCCCEEEECCCCEEEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
DTQQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA