Click here to switch to the map view.

The map label for this gene is recO

Identifier: 126208027

GI number: 126208027

Start: 615674

End: 616396

Strand: Direct

Name: recO

Synonym: APL_0545

Alternate gene names: 126208027

Gene position: 615674-616396 (Clockwise)

Preceding gene: 126208026

Following gene: 126208042

Centisome position: 27.07

GC content: 41.91

Gene sequence:

>723_bases
ATGATCGAAAACTGGCATCGAGGTTTTGTTCTTCACCGTCGCGAATATAGCGAAACAAGTCTATTAGTCGATTTCTTTAC
CGAAGAACACGGAAGAGTCACACTGCTTGCTAAAGGTGCAAGACGACCTCGTTCGCCGCTGAAAGCCGTATTACAACCAT
TTACGCCTTTATTGTTACGTTGGAGCGGTAAGGGCGATCTAAAAACTTTGACTAAAGCGGAACCTGCGTCATTAACTTTA
CCGATGCAAACCTTAGCCTTATATAGCGGGTTCTATGTTAATGAAGTGCTTGCAAGAGTGCTGGAAAACCAGACCGCTTA
CCCGGAACTATTTCAGCATTATTTGCAGTGTATGACACGCCTTGCTACCCAGCCGAAGCAGATTGAACCGATTTTACGCA
CATTTGAATTTCAAATGCTTAAAGCATTGGGCTATGGTGTGAATTTCTCTATTTGTGCCGCAACCGGTGATCCGGTTTCC
CCCTCAATGACTTATCAATTTCGAGAAAATCAAGGCTTTATTGCCTCGCTTTTGCAGAATAATTATACTTTTCTTGGTAA
AGATTTATTGGCTTTCGAGCAATTGAATTTTTCCGATAAAGCCACCTTACAAGCGGCGAAACGCTTTACCCGTATGGCAT
TAAAACCTTACTTAGGTTCTCAACCGTTAAAAAGCCGAGAACTGTTCCAAAGTATCCTACCTAATAAACTTAAAAGCAGT
TAA

Upstream 100 bases:

>100_bases
CAAAGTTCACTTGGAATTATGGGTGAAAGTGAAAGCCGGCTGGGCGGATGACGAACGTGCATTACGCAGTTTAGGTTATA
TGGACGAGTAAACCTCAATA

Downstream 100 bases:

>100_bases
ACGCTAAAAAAGAGTAAATAAAAGCGGTCTGAATTTGTAAAAATCTTGCAAATTCAGACCGCTTATTTGTATATTGATTC
TATATATGCCTTAGTTAATA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIENWHRGFVLHRREYSETSLLVDFFTEEHGRVTLLAKGARRPRSPLKAVLQPFTPLLLRWSGKGDLKTLTKAEPASLTL
PMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMTRLATQPKQIEPILRTFEFQMLKALGYGVNFSICAATGDPVS
PSMTYQFRENQGFIASLLQNNYTFLGKDLLAFEQLNFSDKATLQAAKRFTRMALKPYLGSQPLKSRELFQSILPNKLKSS

Sequences:

>Translated_240_residues
MIENWHRGFVLHRREYSETSLLVDFFTEEHGRVTLLAKGARRPRSPLKAVLQPFTPLLLRWSGKGDLKTLTKAEPASLTL
PMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMTRLATQPKQIEPILRTFEFQMLKALGYGVNFSICAATGDPVS
PSMTYQFRENQGFIASLLQNNYTFLGKDLLAFEQLNFSDKATLQAAKRFTRMALKPYLGSQPLKSRELFQSILPNKLKSS
>Mature_240_residues
MIENWHRGFVLHRREYSETSLLVDFFTEEHGRVTLLAKGARRPRSPLKAVLQPFTPLLLRWSGKGDLKTLTKAEPASLTL
PMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMTRLATQPKQIEPILRTFEFQMLKALGYGVNFSICAATGDPVS
PSMTYQFRENQGFIASLLQNNYTFLGKDLLAFEQLNFSDKATLQAAKRFTRMALKPYLGSQPLKSRELFQSILPNKLKSS

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

Organism=Escherichia coli, GI2367140, Length=235, Percent_Identity=57.8723404255319, Blast_Score=282, Evalue=2e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_ACTP2 (A3MZR1)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001053252.1
- ProteinModelPortal:   A3MZR1
- STRING:   A3MZR1
- GeneID:   4850408
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_0545
- eggNOG:   COG1381
- HOGENOM:   HBG645116
- OMA:   SILQPFQ
- PhylomeDB:   A3MZR1
- ProtClustDB:   PRK00085
- BioCyc:   APLE416269:APL_0545-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 27419; Mature: 27419

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENWHRGFVLHRREYSETSLLVDFFTEEHGRVTLLAKGARRPRSPLKAVLQPFTPLLLR
CCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCHHHEEE
WSGKGDLKTLTKAEPASLTLPMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMTR
ECCCCCCHHHCCCCCCCEECHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LATQPKQIEPILRTFEFQMLKALGYGVNFSICAATGDPVSPSMTYQFRENQGFIASLLQN
HCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCCCHHHHHHHC
NYTFLGKDLLAFEQLNFSDKATLQAAKRFTRMALKPYLGSQPLKSRELFQSILPNKLKSS
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MIENWHRGFVLHRREYSETSLLVDFFTEEHGRVTLLAKGARRPRSPLKAVLQPFTPLLLR
CCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCHHHEEE
WSGKGDLKTLTKAEPASLTLPMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMTR
ECCCCCCHHHCCCCCCCEECHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LATQPKQIEPILRTFEFQMLKALGYGVNFSICAATGDPVSPSMTYQFRENQGFIASLLQN
HCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCCCHHHHHHHC
NYTFLGKDLLAFEQLNFSDKATLQAAKRFTRMALKPYLGSQPLKSRELFQSILPNKLKSS
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA