BacMap

Definition	Shewanella baltica OS155 chromosome, complete genome.
Accession	NC_009052
Length	5,127,376

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The map label for this gene is ytrB [H]

Identifier: 126176461

GI number: 126176461

Start: 5005029

End: 5005892

Strand: Reverse

Name: ytrB [H]

Synonym: Sbal_4276

Alternate gene names: 126176461

Gene position: 5005892-5005029 (Counterclockwise)

Preceding gene: 126176462

Following gene: 126176460

Centisome position: 97.63

GC content: 49.65

Gene sequence:

>864_bases
ATGGACCAAGCGTGCACACCAATACTTGAATTTAGCCAAGTGAATAAAGTCTTTCGCGGTAAAGGCGCAGGTGAAAAGTG
GGCGCTTAAGGATTTATCGTTAACCTTGTCCGCGGGCATGGTGGTCGGGTTATTAGGGCAAAATGGGGCGGGTAAATCGA
CCCTAATGCGCTGCGCTTTGGGTGTGCTCACGCCGGATTCTGGCAGTATTGTTACCTTAGGCGAAACGCCCGAAAACTTA
ACCTCAAAGGCAAAGGAGCGCTTAGGTTATGTGCCGCAGCAACCTTTTGGTTATGAAGGTTTTACCATCGAACGGGCTCT
CGATTTACACCGCAGTTTTTATCCCAATTGGGACATGCAATTAGAGCAAGATTGGCTAGTACGGTTCGAGTTAGATGTGA
CCCAACAGGTGCAACGTTTATCTGTGGGACAAAGGCAATCGCTAGCCTTGATTATGGCGATGGCCTATCGCCCTGAGCTA
TTGATCCTCGATGAACCGGTCGCCAGTCTCGATCCGATTGTGCGGCGCAAATTTATGGTCGATTTGTTCGATCTCGCCCT
CGAATCGGGTTCCGCTGTATTGTTTTCATCCCATATCACCTCAGATATCGAGCGGGTTGCCAGTCATGTGGCGCTGATTA
AACACGGCGAATTAGTGCTATTTAAAGAAATCGATGCCCTACGGGAACAGGTGCGTTTACTCACACTCGCACCCGAAACG
GTTTTGCCTGAGTCGGTCACTGTGTTGAGTCGTGTCGGTGATTCAGTGCTGGTGGATTTAGGCGAGCACAGCGCGCCAAT
ATCGGGCGTGTTAAAGAACGAAGCCCTTAATCTGGAACAGCTTTTTATGGAGCTACACAGATGA

Upstream 100 bases:

>100_bases
GCCTGCCCGAGTTAATGCAATTGATAAATGAACGCTGGCAAGACTAGCGTTAACCTACTGTCACTTATCGATAAAATAGA
ATAAAAAAGGATGATATTCG

Downstream 100 bases:

>100_bases
GTGCGCCAGAACTTAACATCACGCCGACGGCTAAGATGAAAGGCGCGCGGTTGATGAATCCATTTAATGGCATGCTGCGC
CTTTGGTGCTTTGACGTCGG

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MDQACTPILEFSQVNKVFRGKGAGEKWALKDLSLTLSAGMVVGLLGQNGAGKSTLMRCALGVLTPDSGSIVTLGETPENL
TSKAKERLGYVPQQPFGYEGFTIERALDLHRSFYPNWDMQLEQDWLVRFELDVTQQVQRLSVGQRQSLALIMAMAYRPEL
LILDEPVASLDPIVRRKFMVDLFDLALESGSAVLFSSHITSDIERVASHVALIKHGELVLFKEIDALREQVRLLTLAPET
VLPESVTVLSRVGDSVLVDLGEHSAPISGVLKNEALNLEQLFMELHR

Sequences:

>Translated_287_residues
MDQACTPILEFSQVNKVFRGKGAGEKWALKDLSLTLSAGMVVGLLGQNGAGKSTLMRCALGVLTPDSGSIVTLGETPENL
TSKAKERLGYVPQQPFGYEGFTIERALDLHRSFYPNWDMQLEQDWLVRFELDVTQQVQRLSVGQRQSLALIMAMAYRPEL
LILDEPVASLDPIVRRKFMVDLFDLALESGSAVLFSSHITSDIERVASHVALIKHGELVLFKEIDALREQVRLLTLAPET
VLPESVTVLSRVGDSVLVDLGEHSAPISGVLKNEALNLEQLFMELHR
>Mature_287_residues
MDQACTPILEFSQVNKVFRGKGAGEKWALKDLSLTLSAGMVVGLLGQNGAGKSTLMRCALGVLTPDSGSIVTLGETPENL
TSKAKERLGYVPQQPFGYEGFTIERALDLHRSFYPNWDMQLEQDWLVRFELDVTQQVQRLSVGQRQSLALIMAMAYRPEL
LILDEPVASLDPIVRRKFMVDLFDLALESGSAVLFSSHITSDIERVASHVALIKHGELVLFKEIDALREQVRLLTLAPET
VLPESVTVLSRVGDSVLVDLGEHSAPISGVLKNEALNLEQLFMELHR

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=207, Percent_Identity=31.4009661835749, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI45446740, Length=218, Percent_Identity=30.7339449541284, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI47078218, Length=218, Percent_Identity=30.7339449541284, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI27262624, Length=217, Percent_Identity=29.0322580645161, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI27262626, Length=217, Percent_Identity=29.0322580645161, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI21536376, Length=226, Percent_Identity=29.2035398230088, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI105990541, Length=214, Percent_Identity=27.1028037383178, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI116734710, Length=217, Percent_Identity=27.6497695852535, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI6005701, Length=235, Percent_Identity=25.531914893617, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI150417984, Length=226, Percent_Identity=28.3185840707965, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27477115, Length=200, Percent_Identity=28.5, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI153792144, Length=213, Percent_Identity=26.2910798122066, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI27881501, Length=270, Percent_Identity=25.1851851851852, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI30795238, Length=270, Percent_Identity=25.1851851851852, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI27436953, Length=236, Percent_Identity=25, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI89111135, Length=220, Percent_Identity=26.3636363636364, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1786319, Length=308, Percent_Identity=29.2207792207792, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081782, Length=229, Percent_Identity=28.82096069869, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI48994943, Length=201, Percent_Identity=28.8557213930348, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786398, Length=231, Percent_Identity=29.004329004329, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081791, Length=237, Percent_Identity=29.1139240506329, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=30.4932735426009, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788165, Length=178, Percent_Identity=35.3932584269663, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788450, Length=219, Percent_Identity=27.3972602739726, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788472, Length=246, Percent_Identity=28.4552845528455, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI48995001, Length=206, Percent_Identity=28.6407766990291, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790739, Length=210, Percent_Identity=30, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788897, Length=247, Percent_Identity=31.5789473684211, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789593, Length=218, Percent_Identity=26.605504587156, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787029, Length=226, Percent_Identity=30.5309734513274, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790525, Length=229, Percent_Identity=26.6375545851528, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786345, Length=222, Percent_Identity=31.0810810810811, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI145693107, Length=220, Percent_Identity=28.1818181818182, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786698, Length=228, Percent_Identity=27.1929824561404, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790190, Length=235, Percent_Identity=25.9574468085106, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788210, Length=232, Percent_Identity=28.8793103448276, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788506, Length=206, Percent_Identity=30.5825242718447, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789991, Length=234, Percent_Identity=26.4957264957265, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788761, Length=223, Percent_Identity=27.3542600896861, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786563, Length=204, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI2367384, Length=243, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789672, Length=226, Percent_Identity=24.7787610619469, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790162, Length=229, Percent_Identity=27.9475982532751, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787370, Length=220, Percent_Identity=25, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082268, Length=233, Percent_Identity=27.8969957081545, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786803, Length=210, Percent_Identity=27.1428571428571, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787759, Length=236, Percent_Identity=28.3898305084746, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789751, Length=183, Percent_Identity=32.7868852459016, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786253, Length=193, Percent_Identity=27.979274611399, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789962, Length=232, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787041, Length=233, Percent_Identity=26.6094420600858, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788540, Length=181, Percent_Identity=30.939226519337, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790467, Length=205, Percent_Identity=25.3658536585366, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=202, Percent_Identity=28.7128712871287, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71983523, Length=202, Percent_Identity=28.7128712871287, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71983516, Length=202, Percent_Identity=28.7128712871287, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17565586, Length=212, Percent_Identity=28.7735849056604, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17510237, Length=219, Percent_Identity=25.1141552511416, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI115533608, Length=204, Percent_Identity=27.9411764705882, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71988343, Length=226, Percent_Identity=30.0884955752212, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=213, Percent_Identity=27.6995305164319, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24650853, Length=255, Percent_Identity=28.2352941176471, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24650855, Length=255, Percent_Identity=28.2352941176471, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24582014, Length=207, Percent_Identity=29.951690821256, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24582012, Length=207, Percent_Identity=29.951690821256, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI281362751, Length=251, Percent_Identity=28.6852589641434, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI85725262, Length=216, Percent_Identity=30.0925925925926, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI28574150, Length=219, Percent_Identity=30.5936073059361, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI116007328, Length=219, Percent_Identity=30.5936073059361, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24666092, Length=253, Percent_Identity=26.4822134387352, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI221512771, Length=233, Percent_Identity=25.7510729613734, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24643674, Length=215, Percent_Identity=25.1162790697674, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648314, Length=214, Percent_Identity=23.8317757009346, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28573573, Length=224, Percent_Identity=25, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI28573571, Length=224, Percent_Identity=25, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI116007184, Length=236, Percent_Identity=28.3898305084746, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221500365, Length=236, Percent_Identity=28.3898305084746, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 31754; Mature: 31754

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQACTPILEFSQVNKVFRGKGAGEKWALKDLSLTLSAGMVVGLLGQNGAGKSTLMRCAL
CCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
GVLTPDSGSIVTLGETPENLTSKAKERLGYVPQQPFGYEGFTIERALDLHRSFYPNWDMQ
HHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCE
LEQDWLVRFELDVTQQVQRLSVGQRQSLALIMAMAYRPELLILDEPVASLDPIVRRKFMV
ECCCEEEEEEECHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHH
DLFDLALESGSAVLFSSHITSDIERVASHVALIKHGELVLFKEIDALREQVRLLTLAPET
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHEECCHH
VLPESVTVLSRVGDSVLVDLGEHSAPISGVLKNEALNLEQLFMELHR
HCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MDQACTPILEFSQVNKVFRGKGAGEKWALKDLSLTLSAGMVVGLLGQNGAGKSTLMRCAL
CCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
GVLTPDSGSIVTLGETPENLTSKAKERLGYVPQQPFGYEGFTIERALDLHRSFYPNWDMQ
HHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCE
LEQDWLVRFELDVTQQVQRLSVGQRQSLALIMAMAYRPELLILDEPVASLDPIVRRKFMV
ECCCEEEEEEECHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHH
DLFDLALESGSAVLFSSHITSDIERVASHVALIKHGELVLFKEIDALREQVRLLTLAPET
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHEECCHH
VLPESVTVLSRVGDSVLVDLGEHSAPISGVLKNEALNLEQLFMELHR
HCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]