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The map label for this gene is rbpD [H]

Identifier: 126176361

GI number: 126176361

Start: 4889810

End: 4890274

Strand: Direct

Name: rbpD [H]

Synonym: Sbal_4176

Alternate gene names: 126176361

Gene position: 4889810-4890274 (Clockwise)

Preceding gene: 126176358

Following gene: 126176363

Centisome position: 95.37

GC content: 41.94

Gene sequence:

>465_bases
ATGCAAAAGTCATTTCTTATTATTTTGATTGTCGCCATTGTTGGCGCCTTTGTGCTATTTCAGTTTGCACCTACGCTGCC
GGCTTATATTGCCTTCGTTGCAGGCGTTATTGTGACTAGCCTTATCTTTAAACTTGTTCCAGAGACTTCATCATCTCATG
CTACAGAAGAACAATATGTTGGTCCTACTATGACCTTATATGTAGGTAACCTGCCTTATCGTGTCCATGAAGGTGAAGTA
AAAGTATTGTTTGGTGAGTTTGGCCCAGTAAACTCTGTGCGTTTAGTCAGAGATCGTAAGACTGGTCGTCGTAAAGGTTT
TGGTTTTGTGGAGATGTCAGAATCTGGCGCTCAGAAAGCCATGGTTAAACTGAATGACTATAGCTTCCAAGAAAGAACCT
TAAAAGTAAGAGAAGCAAAAACACAAGATTCGGAAGCTGCCGACCGTACTGGTACTGACGAGTAG

Upstream 100 bases:

>100_bases
ATATTTCAGCAATGGTCTAGTGTAAAAGTAAATAATTCATTACCATATACTTGCTGTTAACAGTTATTTATCAATTTTCC
ATTCATCAGAGAGCATTCTT

Downstream 100 bases:

>100_bases
TATTGCCGTTTAAACTGTTTTGTTTGACGTTGTAAATTTAGTTGGTTGTGGTGATTCGTTCGATAGTTGAAAAGCCACAA
TCAATTAATGTTGTTGTTAA

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MQKSFLIILIVAIVGAFVLFQFAPTLPAYIAFVAGVIVTSLIFKLVPETSSSHATEEQYVGPTMTLYVGNLPYRVHEGEV
KVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSESGAQKAMVKLNDYSFQERTLKVREAKTQDSEAADRTGTDE

Sequences:

>Translated_154_residues
MQKSFLIILIVAIVGAFVLFQFAPTLPAYIAFVAGVIVTSLIFKLVPETSSSHATEEQYVGPTMTLYVGNLPYRVHEGEV
KVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSESGAQKAMVKLNDYSFQERTLKVREAKTQDSEAADRTGTDE
>Mature_154_residues
MQKSFLIILIVAIVGAFVLFQFAPTLPAYIAFVAGVIVTSLIFKLVPETSSSHATEEQYVGPTMTLYVGNLPYRVHEGEV
KVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSESGAQKAMVKLNDYSFQERTLKVREAKTQDSEAADRTGTDE

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4557493, Length=82, Percent_Identity=42.6829268292683, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI14149675, Length=82, Percent_Identity=41.4634146341463, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI35493811, Length=105, Percent_Identity=36.1904761904762, Blast_Score=64, Evalue=7e-11,
Organism=Homo sapiens, GI4757926, Length=105, Percent_Identity=36.1904761904762, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=48.7179487179487, Blast_Score=74, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=42.8571428571429, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=39.0243902439024, Blast_Score=66, Evalue=9e-12,
Organism=Drosophila melanogaster, GI17137710, Length=96, Percent_Identity=41.6666666666667, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI19920866, Length=106, Percent_Identity=33.0188679245283, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582412, Length=106, Percent_Identity=33.0188679245283, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582417, Length=106, Percent_Identity=33.0188679245283, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45550943, Length=106, Percent_Identity=33.0188679245283, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582419, Length=106, Percent_Identity=33.0188679245283, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582423, Length=106, Percent_Identity=33.0188679245283, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582421, Length=106, Percent_Identity=33.0188679245283, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 17085; Mature: 17085

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKSFLIILIVAIVGAFVLFQFAPTLPAYIAFVAGVIVTSLIFKLVPETSSSHATEEQYV
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHC
GPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSESGAQKA
CCEEEEEECCCCEEEECCCEEEEEECCCCCCCEEEEECCCCCCCCCCCEEEECCCCCHHE
MVKLNDYSFQERTLKVREAKTQDSEAADRTGTDE
EEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQKSFLIILIVAIVGAFVLFQFAPTLPAYIAFVAGVIVTSLIFKLVPETSSSHATEEQYV
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHC
GPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSESGAQKA
CCEEEEEECCCCEEEECCCEEEEEECCCCCCCEEEEECCCCCCCCCCCEEEECCCCCHHE
MVKLNDYSFQERTLKVREAKTQDSEAADRTGTDE
EEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]