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The map label for this gene is speF [H]

Identifier: 126176270

GI number: 126176270

Start: 4790514

End: 4792676

Strand: Direct

Name: speF [H]

Synonym: Sbal_4084

Alternate gene names: 126176270

Gene position: 4790514-4792676 (Clockwise)

Preceding gene: 126176269

Following gene: 126176271

Centisome position: 93.43

GC content: 43.92

Gene sequence:

>2163_bases
ATGAAATCATTAAAAGTAGCCGCTAGCTTATCTGTTAGATCTTGTTTCGATATCGACAGAGAAGTCGTCAATGTATTAAC
CACAGATTTTTGCGATGTGGGCGCGGCTGTAGTCTCTGTTGATGATGTTAGAAATGGTATTGTTGAAAAGATTAAAAACA
CCGGATTGAAACTACCGATTTTCGTTTCAGTTTGCTGCGAAGAAACTTTCCCAGACGATGTTTGCTCATCTATTACTGGG
GTATTTGAACTCTGCGGCGATAACACTGACTTCTACGGAAAACAGGTTGAAACTGCGGTCGATAAATATGAGCAAGCGCT
ATTACCTCCTTTCTTCGGCACACTGAAAAAGTACGTTGAGATGGGTAATTCCACCTTTGCTTGTCCAGGTCACCAAGGCG
GACAATTCTTCCGTAAGCATCCTGTGGGTCGTCAGTTCTTCGACTTTTTTGGCGAAACGATTTTCCGCGCCGACATGTGT
AATGCCGACGTCAAATTGGGTGATTTATTGATCCATGAAGGCGCACCACTGGCAGCGCAGAAATATGCTGCCAAAGTCTT
TAATGCCGATAAAACCTACTTTGTACTTAACGGGACTTCATCTTCAAATAAAGTGGCCACCAATGCGCTGCTTGCTAAAG
GTGACCTGGTATTATTCGACCGCAATAACCACAAATCAAACCACCATGGCGCGTTAATCCAAGCTGGTGCAACCCCCGTT
TATTTAGAAACCGCACGTAATCCCTTCGGATTTATTGGTGGTATCGACGCTCATTGCTTCCAAGAGTCCTATTTAAGAGA
TCAAATTCGCGAAGTCGCCCCAGAAAGAGCCGATGAAAAACGCCCCTTCCGTTTAGCGATAATCCAACTCGGCACCTATG
ACGGCACCATCTACAATGCTCGCCAAGTAATTGATAAAATTGGTCATCTGTGTGATTACGTCTTATTTGACTCAGCTTGG
GTCGGTTACGAACAGTTCATCCCTATGATGAATGACTGCTCGCCACTCTTGCTCGAACTGACCGCTGAAGATCCTGGCAT
TATCGTGACTCAGTCGGTGCATAAACAGCAGGCGGGCTTCTCGCAAACATCGCAAATCCATAAAAAAGATAAACATATCA
AAGGCCAAGATAGATATTGCAACCATAAACGCTTCAACAACGCCTTTATGATGCATGCTTCTACCAGCCCCTTCTATCCT
CTATTTGCGGCGCTAGATGTGAACGCGAAAATGCATGAAGGCGCAAGCGGTCGTTACCTGTGGCGCGAAGCGGTAAAAGC
CGGCATTGAAGCACGTAAGCTACTGCTGAAAAAGTGTAAATATATCAAGCCATTCGTGCCAACCATGATAGATGGCCGCC
TATGGCAAGACTATGAAACAGAGCAAATGGCCGATGACTTACGCTTCTTCGAATTCGAACCCGGTCAGAAATGGCACTCA
TTCGAAGGTTATGACAAAGGCCAATACTTTGTTGACCCTTGTAAGTTCCTATTAACAACACCAGGCATAGATGTAGAAAC
CGGTAAATATACCGACTTTGGTATTCCAGCGACTATTCTGGCTAACTTCTTACGGGAAAATAATATTATTCCTGAGAAGT
GCGACTTAAATTCGATTTTATTCCTGATGACGCCTGCGGAAGATATGGCCAAGATGCAACATCTGGTCTCACAAATATCT
CGATTCGAAAAATTAGTCGATGAAGATGCACCATTATCTGAAGTTTTACCTAACGTCTATAACGCGAATAAAGCACGTTA
TCAAGACTATACCATCCGCCAACTTTGCCAAGAAATGCACAATCTTTATGTCAGCCATGACGTAAAACAACTGCAGAAAG
AAATGTTCCGTAAAGCGCATTTCCCAACCAAAGTCATGGATCCACAGGAAGCAAACCTAGAATTTATTCGTGGCAAAGTC
GAATTAGTCCCGCTATCACAAATTGAGGGAAGAATTGCTGCAGAAGGCGCACTTCCTTACCCACCAGGTGTGCTATGTAT
GGTACCAGGTGAAATATGGGGTGGCTCTGTTCAACGTTATTTCCAAGCTCTCGAAGAAGGTATCAACTTATTACCTGGAT
TCTCGCCAGAACTACAAGGTGTTTATCTCGAAAACACCCCTGACGGCAAAATTCAAGCAATGGGCTATGTACTTAATAAA
TAA

Upstream 100 bases:

>100_bases
CGCACGGAATAGCTATATCTAATTTTTATGCCATTAATGTTTTTAATTAGGTATAGGCACACTTGTATCTATTTTTTAAA
AAGTAAAAGGGAAATTAACT

Downstream 100 bases:

>100_bases
TGAAGACTGACTGCAGAGTTTATTAACCCCGCTCTGCAGTCAATTTCATACTCCCTATAATAAGTCACCTACATTAGGTT
ATTAGTATGAGTAAATCAGA

Product: ornithine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 720; Mature: 720

Protein sequence:

>720_residues
MKSLKVAASLSVRSCFDIDREVVNVLTTDFCDVGAAVVSVDDVRNGIVEKIKNTGLKLPIFVSVCCEETFPDDVCSSITG
VFELCGDNTDFYGKQVETAVDKYEQALLPPFFGTLKKYVEMGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETIFRADMC
NADVKLGDLLIHEGAPLAAQKYAAKVFNADKTYFVLNGTSSSNKVATNALLAKGDLVLFDRNNHKSNHHGALIQAGATPV
YLETARNPFGFIGGIDAHCFQESYLRDQIREVAPERADEKRPFRLAIIQLGTYDGTIYNARQVIDKIGHLCDYVLFDSAW
VGYEQFIPMMNDCSPLLLELTAEDPGIIVTQSVHKQQAGFSQTSQIHKKDKHIKGQDRYCNHKRFNNAFMMHASTSPFYP
LFAALDVNAKMHEGASGRYLWREAVKAGIEARKLLLKKCKYIKPFVPTMIDGRLWQDYETEQMADDLRFFEFEPGQKWHS
FEGYDKGQYFVDPCKFLLTTPGIDVETGKYTDFGIPATILANFLRENNIIPEKCDLNSILFLMTPAEDMAKMQHLVSQIS
RFEKLVDEDAPLSEVLPNVYNANKARYQDYTIRQLCQEMHNLYVSHDVKQLQKEMFRKAHFPTKVMDPQEANLEFIRGKV
ELVPLSQIEGRIAAEGALPYPPGVLCMVPGEIWGGSVQRYFQALEEGINLLPGFSPELQGVYLENTPDGKIQAMGYVLNK

Sequences:

>Translated_720_residues
MKSLKVAASLSVRSCFDIDREVVNVLTTDFCDVGAAVVSVDDVRNGIVEKIKNTGLKLPIFVSVCCEETFPDDVCSSITG
VFELCGDNTDFYGKQVETAVDKYEQALLPPFFGTLKKYVEMGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETIFRADMC
NADVKLGDLLIHEGAPLAAQKYAAKVFNADKTYFVLNGTSSSNKVATNALLAKGDLVLFDRNNHKSNHHGALIQAGATPV
YLETARNPFGFIGGIDAHCFQESYLRDQIREVAPERADEKRPFRLAIIQLGTYDGTIYNARQVIDKIGHLCDYVLFDSAW
VGYEQFIPMMNDCSPLLLELTAEDPGIIVTQSVHKQQAGFSQTSQIHKKDKHIKGQDRYCNHKRFNNAFMMHASTSPFYP
LFAALDVNAKMHEGASGRYLWREAVKAGIEARKLLLKKCKYIKPFVPTMIDGRLWQDYETEQMADDLRFFEFEPGQKWHS
FEGYDKGQYFVDPCKFLLTTPGIDVETGKYTDFGIPATILANFLRENNIIPEKCDLNSILFLMTPAEDMAKMQHLVSQIS
RFEKLVDEDAPLSEVLPNVYNANKARYQDYTIRQLCQEMHNLYVSHDVKQLQKEMFRKAHFPTKVMDPQEANLEFIRGKV
ELVPLSQIEGRIAAEGALPYPPGVLCMVPGEIWGGSVQRYFQALEEGINLLPGFSPELQGVYLENTPDGKIQAMGYVLNK
>Mature_720_residues
MKSLKVAASLSVRSCFDIDREVVNVLTTDFCDVGAAVVSVDDVRNGIVEKIKNTGLKLPIFVSVCCEETFPDDVCSSITG
VFELCGDNTDFYGKQVETAVDKYEQALLPPFFGTLKKYVEMGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETIFRADMC
NADVKLGDLLIHEGAPLAAQKYAAKVFNADKTYFVLNGTSSSNKVATNALLAKGDLVLFDRNNHKSNHHGALIQAGATPV
YLETARNPFGFIGGIDAHCFQESYLRDQIREVAPERADEKRPFRLAIIQLGTYDGTIYNARQVIDKIGHLCDYVLFDSAW
VGYEQFIPMMNDCSPLLLELTAEDPGIIVTQSVHKQQAGFSQTSQIHKKDKHIKGQDRYCNHKRFNNAFMMHASTSPFYP
LFAALDVNAKMHEGASGRYLWREAVKAGIEARKLLLKKCKYIKPFVPTMIDGRLWQDYETEQMADDLRFFEFEPGQKWHS
FEGYDKGQYFVDPCKFLLTTPGIDVETGKYTDFGIPATILANFLRENNIIPEKCDLNSILFLMTPAEDMAKMQHLVSQIS
RFEKLVDEDAPLSEVLPNVYNANKARYQDYTIRQLCQEMHNLYVSHDVKQLQKEMFRKAHFPTKVMDPQEANLEFIRGKV
ELVPLSQIEGRIAAEGALPYPPGVLCMVPGEIWGGSVQRYFQALEEGINLLPGFSPELQGVYLENTPDGKIQAMGYVLNK

Specific function: Spermidine biosynthesis from ornithine. [C]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

Organism=Escherichia coli, GI1786909, Length=718, Percent_Identity=69.91643454039, Blast_Score=1079, Evalue=0.0,
Organism=Escherichia coli, GI87082193, Length=718, Percent_Identity=69.0807799442897, Blast_Score=1057, Evalue=0.0,
Organism=Escherichia coli, GI1790573, Length=702, Percent_Identity=32.1937321937322, Blast_Score=341, Evalue=8e-95,
Organism=Escherichia coli, GI1786384, Length=607, Percent_Identity=34.5963756177924, Blast_Score=330, Evalue=1e-91,
Organism=Escherichia coli, GI221142684, Length=635, Percent_Identity=32.4409448818898, Blast_Score=330, Evalue=2e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR005308
- InterPro:   IPR011193
- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C; PF03709 OKR_DC_1_N [H]

EC number: =4.1.1.17 [H]

Molecular weight: Translated: 81092; Mature: 81092

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00703 OKR_DC_1 ; PS00196 COPPER_BLUE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLKVAASLSVRSCFDIDREVVNVLTTDFCDVGAAVVSVDDVRNGIVEKIKNTGLKLPI
CCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCCCCEE
FVSVCCEETFPDDVCSSITGVFELCGDNTDFYGKQVETAVDKYEQALLPPFFGTLKKYVE
HHEEHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
MGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETIFRADMCNADVKLGDLLIHEGAPLAAQ
CCCCEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECCEEEECCCCHHHH
KYAAKVFNADKTYFVLNGTSSSNKVATNALLAKGDLVLFDRNNHKSNHHGALIQAGATPV
HHHHHHHCCCCEEEEEECCCCCCCHHHHHEEECCCEEEEECCCCCCCCCCCEEECCCCEE
YLETARNPFGFIGGIDAHCFQESYLRDQIREVAPERADEKRPFRLAIIQLGTYDGTIYNA
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCHHHH
RQVIDKIGHLCDYVLFDSAWVGYEQFIPMMNDCSPLLLELTAEDPGIIVTQSVHKQQAGF
HHHHHHHHHHHHHHHHHCHHCCHHHHCCCCCCCCCEEEEEECCCCCEEEECHHHHHHCCC
SQTSQIHKKDKHIKGQDRYCNHKRFNNAFMMHASTSPFYPLFAALDVNAKMHEGASGRYL
HHHHHHHHHHCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEEEEEECCCHHCCCCCCCHH
WREAVKAGIEARKLLLKKCKYIKPFVPTMIDGRLWQDYETEQMADDLRFFEFEPGQKWHS
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHEEECCCCCCCCC
FEGYDKGQYFVDPCKFLLTTPGIDVETGKYTDFGIPATILANFLRENNIIPEKCDLNSIL
CCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEE
FLMTPAEDMAKMQHLVSQISRFEKLVDEDAPLSEVLPNVYNANKARYQDYTIRQLCQEMH
EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHCCCCHHCCCHHHHHHHHHHH
NLYVSHDVKQLQKEMFRKAHFPTKVMDPQEANLEFIRGKVELVPLSQIEGRIAAEGALPY
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEECEEEEEEHHHHCCCEEECCCCCC
PPGVLCMVPGEIWGGSVQRYFQALEEGINLLPGFSPELQGVYLENTPDGKIQAMGYVLNK
CCCEEEEECCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECEECCC
>Mature Secondary Structure
MKSLKVAASLSVRSCFDIDREVVNVLTTDFCDVGAAVVSVDDVRNGIVEKIKNTGLKLPI
CCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCCCCEE
FVSVCCEETFPDDVCSSITGVFELCGDNTDFYGKQVETAVDKYEQALLPPFFGTLKKYVE
HHEEHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
MGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETIFRADMCNADVKLGDLLIHEGAPLAAQ
CCCCEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECCEEEECCCCHHHH
KYAAKVFNADKTYFVLNGTSSSNKVATNALLAKGDLVLFDRNNHKSNHHGALIQAGATPV
HHHHHHHCCCCEEEEEECCCCCCCHHHHHEEECCCEEEEECCCCCCCCCCCEEECCCCEE
YLETARNPFGFIGGIDAHCFQESYLRDQIREVAPERADEKRPFRLAIIQLGTYDGTIYNA
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCHHHH
RQVIDKIGHLCDYVLFDSAWVGYEQFIPMMNDCSPLLLELTAEDPGIIVTQSVHKQQAGF
HHHHHHHHHHHHHHHHHCHHCCHHHHCCCCCCCCCEEEEEECCCCCEEEECHHHHHHCCC
SQTSQIHKKDKHIKGQDRYCNHKRFNNAFMMHASTSPFYPLFAALDVNAKMHEGASGRYL
HHHHHHHHHHCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEEEEEECCCHHCCCCCCCHH
WREAVKAGIEARKLLLKKCKYIKPFVPTMIDGRLWQDYETEQMADDLRFFEFEPGQKWHS
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHEEECCCCCCCCC
FEGYDKGQYFVDPCKFLLTTPGIDVETGKYTDFGIPATILANFLRENNIIPEKCDLNSIL
CCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEE
FLMTPAEDMAKMQHLVSQISRFEKLVDEDAPLSEVLPNVYNANKARYQDYTIRQLCQEMH
EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHCCCCHHCCCHHHHHHHHHHH
NLYVSHDVKQLQKEMFRKAHFPTKVMDPQEANLEFIRGKVELVPLSQIEGRIAAEGALPY
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEECEEEEEEHHHHCCCEEECCCCCC
PPGVLCMVPGEIWGGSVQRYFQALEEGINLLPGFSPELQGVYLENTPDGKIQAMGYVLNK
CCCEEEEECCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1939141; 8905232; 9278503 [H]