| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is 126175995
Identifier: 126175995
GI number: 126175995
Start: 4464810
End: 4466951
Strand: Direct
Name: 126175995
Synonym: Sbal_3804
Alternate gene names: NA
Gene position: 4464810-4466951 (Clockwise)
Preceding gene: 126175994
Following gene: 126175997
Centisome position: 87.08
GC content: 49.63
Gene sequence:
>2142_bases ATGGAAGACTATAAGATGGCTGCAAATTCTGCGTATTTATCTCACCCGTTTAAAACTTCAGTAATTTCCTCATCCCTCGC AATCGCCATGGGCTTATCGTTAGCACCGCAGGCAATGGCCGATGACAGCGAGTTAGCCAATATTGAACGCTTAGAAGTCC ACGGCCAACAGACCGAAAACCGCAACACGTTAGGTTCGGCTGAAAACCTGCTGAAAGGACAAGGAGTAGATTTCTCCGAA GCGGGTGGCGTATCAGCTCTGCCTATTCTCAATGGCATGATGGGCGATCGCATCAAAGTGTTAGTTGATGGTGCGGACAT TACCGCTTCCTGCGCCAATCAAATGAATCCACCACTGTCCTATATTTCCGCTAATCAAATCACCACAGCCGAAGTGATCG CGGGTGTATCGCCAGTCAGTGCGGGTGGCGACAATATCGCGGGTGTAATCAAGGTCAGCAGCCTTAATCCTAAATTTGGC GAAAGCGATAGCATCAAGTGGAATCGCGGCGATATCTCAACGGGATACCGCAGTGTGAGTGATACCTTGTTACTGGGCAC CAATGCCACAGTTGCCAGCAAAAATATCAGCCTAAGCTATCAAGGCGCCTATGAAGATGCCAACAGCTATAAAGATGGCA ATGGCGATAAAGTCATCGATACCTTGTACCGCGCCCAAAACCACGCATTGACCGCCGCATGGCGCGATGAGACTCAACAA GTTGCCATCAAACTAACCCATCAAAATATTCCATTCCAAGGTTTTGCTAACCAATACATGGATATGACAGATAACAAGAG TTACGGTGCCCTCGCCCGTTATCAACTTAAACTCGACGATGACGGCGAGTTCAGCGCCCAATTCAATTGGCACGGCGTGA AGCACGAGATGGGCTTTTTCACCCCAGAAAAAACCGGCAAGATGCCGATGAACACTGAAGGTGACGACTACAGCTATCAA CTGCACTGGCGCTTGCCAATGGGCGATGACAGCACCTTACTGGTCGGCCAAGAATTCTATAGCTACCAGCTCGACGATGT GTGGCCTGCGGTGCCAGGCACTATGATGGCGCCGAATGATTACATCAACATCAACGATGGCGAACGTCGCCGCGCCGCCG TTTATGGCGAATGGCAGCAAGATTTGAGCCCAAGCTGGTGGTTATCGGCGGGTGTTCGCTTTGAGTATGTCACCACTAAT ACAGGTGAAGTCCAAGCTTATAGCAACATGCCTATGATGGGCATGCCCAATGTCGACGCAGAAGCGGCAAAAGCCTTTAA TGCGATGGACAGAGAGCGTAATGATGATCTGATCGACGCCACCTTACTGGCGCGCTATCAATTATCGGCCAATCAACAAC TTGAGTTTGGCCTTGCCCGCAAGAATCGAGCCCCCAATCTGTACGAGCGTTACAGCTGGGGTCGCGGCACTATGGCAACC ACTATGATAGGTTGGTATGGCGATGGTAATGGTTATGTGGGTAATCCAGATCTAAAGCCAGAAACCGCCCACACCCTGAG CGCAGCCTACAAATATAACGGTGATAGCTGGCAAGTCTCGACCACAGCTTGGTACACAGCGGTGACTAACTATATCGATG CCGAAGTGATTGGTAGCTTCAATCGCACTAGCTCAGCTGATGGCAAACGCAATATTCTTCAATTCACTAACTTAGATGCC AATCTCTATGGTGCACGTTTTAATGCGCTCTATCAGTTTGCCGAAACCAGCACAGGTAAATGGCAAGTGTTAGGTAAAGT GAATGTGACCCGTGGTGAGCGAGATGAAGGCAATGAGCCTTTATATCAAATCAAGCCGCTACAAACTGAGCTGGCACTGC AACATCAACTCGGTAACTGGGAAAACAGCCTTTCATGGCAATGGGTTGCGACCAAAGATCGCGTGGATGACCGCCGCCTT GAAAATGAAACCGATAGCTACTCCTTGCTTAACTTAAACAGCAGCATGAAATGGCAGGATCTGACTGTCACCTTCGCGGT GAATAACCTATTCGACAGCTACTATGAGCTGCCACTGGGCGGTGTGAGTGTGGCGGAATTTAAGGCCGATAATACCAATG GCTTTAAGCAGATTGCCGGTGCAGGCCGCTCGTTCGAACTCAGCGCAAGCTATGCGTTTTAA
Upstream 100 bases:
>100_bases TCAATTCTGTTTTTAACCCGCTTTGTTGCCCTCTGCGACAATATGCCGCACCTGTCACTCTTAGATGCTCTTTATAATGC AGCGCAATTAATCCAAGTGA
Downstream 100 bases:
>100_bases CGACTGATTTTAACCACATAGTTTTTAACCACATGGTTTTTAACGACACGGCTTTTTAGGTCGAGCAGCTCTAAATCCAA ACGTTAAACAAAAAGGGCAA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Copper Receptor; NB Dependent Receptor; NB-Dependent Receptor Protein; Outer Membrane Receptor Protein; Outer Membrane Protein C; NB-Dependent Receptor Plug; Nb-Dependent Receptor; NB-Dependent Receptor Domain Protein; Outer Membrane Protein; NB-Dependent Outer Membrane Receptor; Outer Membrane Insertion C-Terminal Signal; Outer Membrane Copper Receptor OprC; IMP Dehydrogenase/GMP Reductase; Outer Membrane Protein NosA; NB-Dependent Copper Receptor Protein; Iron Complex Outermembrane Recepter Protein; NB-Dependent Receptor Domain-Containing Protein; Nb-Dependent Copper Receptor; Outer Membrane Receptor Proteins
Number of amino acids: Translated: 713; Mature: 713
Protein sequence:
>713_residues MEDYKMAANSAYLSHPFKTSVISSSLAIAMGLSLAPQAMADDSELANIERLEVHGQQTENRNTLGSAENLLKGQGVDFSE AGGVSALPILNGMMGDRIKVLVDGADITASCANQMNPPLSYISANQITTAEVIAGVSPVSAGGDNIAGVIKVSSLNPKFG ESDSIKWNRGDISTGYRSVSDTLLLGTNATVASKNISLSYQGAYEDANSYKDGNGDKVIDTLYRAQNHALTAAWRDETQQ VAIKLTHQNIPFQGFANQYMDMTDNKSYGALARYQLKLDDDGEFSAQFNWHGVKHEMGFFTPEKTGKMPMNTEGDDYSYQ LHWRLPMGDDSTLLVGQEFYSYQLDDVWPAVPGTMMAPNDYININDGERRRAAVYGEWQQDLSPSWWLSAGVRFEYVTTN TGEVQAYSNMPMMGMPNVDAEAAKAFNAMDRERNDDLIDATLLARYQLSANQQLEFGLARKNRAPNLYERYSWGRGTMAT TMIGWYGDGNGYVGNPDLKPETAHTLSAAYKYNGDSWQVSTTAWYTAVTNYIDAEVIGSFNRTSSADGKRNILQFTNLDA NLYGARFNALYQFAETSTGKWQVLGKVNVTRGERDEGNEPLYQIKPLQTELALQHQLGNWENSLSWQWVATKDRVDDRRL ENETDSYSLLNLNSSMKWQDLTVTFAVNNLFDSYYELPLGGVSVAEFKADNTNGFKQIAGAGRSFELSASYAF
Sequences:
>Translated_713_residues MEDYKMAANSAYLSHPFKTSVISSSLAIAMGLSLAPQAMADDSELANIERLEVHGQQTENRNTLGSAENLLKGQGVDFSE AGGVSALPILNGMMGDRIKVLVDGADITASCANQMNPPLSYISANQITTAEVIAGVSPVSAGGDNIAGVIKVSSLNPKFG ESDSIKWNRGDISTGYRSVSDTLLLGTNATVASKNISLSYQGAYEDANSYKDGNGDKVIDTLYRAQNHALTAAWRDETQQ VAIKLTHQNIPFQGFANQYMDMTDNKSYGALARYQLKLDDDGEFSAQFNWHGVKHEMGFFTPEKTGKMPMNTEGDDYSYQ LHWRLPMGDDSTLLVGQEFYSYQLDDVWPAVPGTMMAPNDYININDGERRRAAVYGEWQQDLSPSWWLSAGVRFEYVTTN TGEVQAYSNMPMMGMPNVDAEAAKAFNAMDRERNDDLIDATLLARYQLSANQQLEFGLARKNRAPNLYERYSWGRGTMAT TMIGWYGDGNGYVGNPDLKPETAHTLSAAYKYNGDSWQVSTTAWYTAVTNYIDAEVIGSFNRTSSADGKRNILQFTNLDA NLYGARFNALYQFAETSTGKWQVLGKVNVTRGERDEGNEPLYQIKPLQTELALQHQLGNWENSLSWQWVATKDRVDDRRL ENETDSYSLLNLNSSMKWQDLTVTFAVNNLFDSYYELPLGGVSVAEFKADNTNGFKQIAGAGRSFELSASYAF >Mature_713_residues MEDYKMAANSAYLSHPFKTSVISSSLAIAMGLSLAPQAMADDSELANIERLEVHGQQTENRNTLGSAENLLKGQGVDFSE AGGVSALPILNGMMGDRIKVLVDGADITASCANQMNPPLSYISANQITTAEVIAGVSPVSAGGDNIAGVIKVSSLNPKFG ESDSIKWNRGDISTGYRSVSDTLLLGTNATVASKNISLSYQGAYEDANSYKDGNGDKVIDTLYRAQNHALTAAWRDETQQ VAIKLTHQNIPFQGFANQYMDMTDNKSYGALARYQLKLDDDGEFSAQFNWHGVKHEMGFFTPEKTGKMPMNTEGDDYSYQ LHWRLPMGDDSTLLVGQEFYSYQLDDVWPAVPGTMMAPNDYININDGERRRAAVYGEWQQDLSPSWWLSAGVRFEYVTTN TGEVQAYSNMPMMGMPNVDAEAAKAFNAMDRERNDDLIDATLLARYQLSANQQLEFGLARKNRAPNLYERYSWGRGTMAT TMIGWYGDGNGYVGNPDLKPETAHTLSAAYKYNGDSWQVSTTAWYTAVTNYIDAEVIGSFNRTSSADGKRNILQFTNLDA NLYGARFNALYQFAETSTGKWQVLGKVNVTRGERDEGNEPLYQIKPLQTELALQHQLGNWENSLSWQWVATKDRVDDRRL ENETDSYSLLNLNSSMKWQDLTVTFAVNNLFDSYYELPLGGVSVAEFKADNTNGFKQIAGAGRSFELSASYAF
Specific function: Unknown
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 78945; Mature: 78945
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDYKMAANSAYLSHPFKTSVISSSLAIAMGLSLAPQAMADDSELANIERLEVHGQQTEN CCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHCCEEEEEECCCCCCC RNTLGSAENLLKGQGVDFSEAGGVSALPILNGMMGDRIKVLVDGADITASCANQMNPPLS CCCCCCHHHHHHCCCCCHHHCCCEEEHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCHH YISANQITTAEVIAGVSPVSAGGDNIAGVIKVSSLNPKFGESDSIKWNRGDISTGYRSVS HEECCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCC DTLLLGTNATVASKNISLSYQGAYEDANSYKDGNGDKVIDTLYRAQNHALTAAWRDETQQ CEEEEECCCEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEE VAIKLTHQNIPFQGFANQYMDMTDNKSYGALARYQLKLDDDGEFSAQFNWHGVKHEMGFF EEEEEEECCCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCHHCCCC TPEKTGKMPMNTEGDDYSYQLHWRLPMGDDSTLLVGQEFYSYQLDDVWPAVPGTMMAPND CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECHHHEEECCCCCCCCCCCEECCCC YININDGERRRAAVYGEWQQDLSPSWWLSAGVRFEYVTTNTGEVQAYSNMPMMGMPNVDA EEECCCCCCEEEEEECCHHHCCCCCEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCH EAAKAFNAMDRERNDDLIDATLLARYQLSANQQLEFGLARKNRAPNLYERYSWGRGTMAT HHHHHHHHHHCCCCCCHHHHHHHEEEECCCCCEEEEEHHHCCCCCCHHHHHCCCCCCEEE TMIGWYGDGNGYVGNPDLKPETAHTLSAAYKYNGDSWQVSTTAWYTAVTNYIDAEVIGSF EEEEEEECCCCCCCCCCCCCCHHHHEEEEEEECCCCEEEEHHHHHHHHHHHHCHHHHCCC NRTSSADGKRNILQFTNLDANLYGARFNALYQFAETSTGKWQVLGKVNVTRGERDEGNEP CCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCC LYQIKPLQTELALQHQLGNWENSLSWQWVATKDRVDDRRLENETDSYSLLNLNSSMKWQD EEEEECCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCCCCEEEEECCCCCCEEE LTVTFAVNNLFDSYYELPLGGVSVAEFKADNTNGFKQIAGAGRSFELSASYAF EEEEEEEHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCEEEEEECCC >Mature Secondary Structure MEDYKMAANSAYLSHPFKTSVISSSLAIAMGLSLAPQAMADDSELANIERLEVHGQQTEN CCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHCCEEEEEECCCCCCC RNTLGSAENLLKGQGVDFSEAGGVSALPILNGMMGDRIKVLVDGADITASCANQMNPPLS CCCCCCHHHHHHCCCCCHHHCCCEEEHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCHH YISANQITTAEVIAGVSPVSAGGDNIAGVIKVSSLNPKFGESDSIKWNRGDISTGYRSVS HEECCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCC DTLLLGTNATVASKNISLSYQGAYEDANSYKDGNGDKVIDTLYRAQNHALTAAWRDETQQ CEEEEECCCEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEE VAIKLTHQNIPFQGFANQYMDMTDNKSYGALARYQLKLDDDGEFSAQFNWHGVKHEMGFF EEEEEEECCCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCHHCCCC TPEKTGKMPMNTEGDDYSYQLHWRLPMGDDSTLLVGQEFYSYQLDDVWPAVPGTMMAPND CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECHHHEEECCCCCCCCCCCEECCCC YININDGERRRAAVYGEWQQDLSPSWWLSAGVRFEYVTTNTGEVQAYSNMPMMGMPNVDA EEECCCCCCEEEEEECCHHHCCCCCEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCH EAAKAFNAMDRERNDDLIDATLLARYQLSANQQLEFGLARKNRAPNLYERYSWGRGTMAT HHHHHHHHHHCCCCCCHHHHHHHEEEECCCCCEEEEEHHHCCCCCCHHHHHCCCCCCEEE TMIGWYGDGNGYVGNPDLKPETAHTLSAAYKYNGDSWQVSTTAWYTAVTNYIDAEVIGSF EEEEEEECCCCCCCCCCCCCCHHHHEEEEEEECCCCEEEEHHHHHHHHHHHHCHHHHCCC NRTSSADGKRNILQFTNLDANLYGARFNALYQFAETSTGKWQVLGKVNVTRGERDEGNEP CCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCC LYQIKPLQTELALQHQLGNWENSLSWQWVATKDRVDDRRLENETDSYSLLNLNSSMKWQD EEEEECCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCCCCEEEEECCCCCCEEE LTVTFAVNNLFDSYYELPLGGVSVAEFKADNTNGFKQIAGAGRSFELSASYAF EEEEEEEHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA