| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is 126175936
Identifier: 126175936
GI number: 126175936
Start: 4385647
End: 4388364
Strand: Direct
Name: 126175936
Synonym: Sbal_3742
Alternate gene names: NA
Gene position: 4385647-4388364 (Clockwise)
Preceding gene: 126175931
Following gene: 126175938
Centisome position: 85.53
GC content: 46.32
Gene sequence:
>2718_bases TTGCAAGGGATTCTCAACTACTACAAACAATGTTTTCAACACGATAGTGCCGAAATCAACCTCTGGTCTAGCCACAAGCT TGCTGAGCAAGAAAAGCTATTACTCCAACATGAAGACGAGTTAAGCAGTGGCTTCCTACCCCGTTTACCCGTGCCATTTG CCCAAGCCTCTGCATTAATGGCACGTAGTGCCTTGTATCTACGTGAAAAAGTACTATTGCACTGTTGTTTATTTTTCTGC GGCACAGTCGAACTTAATGGCGAAAAACGTAAAGTCGTGACACCACTCCTTTACCGCGAATGCCAATTACAGGCAGATGG CGATAACATTTACCTGCTGGGCAATGACACATTTTCTGGCCAAGGGCCATTCACCATCAATGAAGCACTATTAGAAAAAT TAGTCGTTGAAGGTCACAGCTTAAGTCAAGAGTTACGCGATAATCCAACAGATGTCAGTGGCTGGATAGCTTGGCTGCGG GCGGGTCAAGCCGATGTTGATACCAGTCATTTATTGCATTTTCCCAAACTGATCGATGAAGCTGAATTCACTAGTTTATG CCGTAAACGTGGGCAGTTTATGGTCAGTCGGAGCCAAATTATTCTTGCAGAGCGTTCGCTCGCTAGTCGGGGCATTTTGC ACGAACTCGACAAGCTAATAACAGCGCCCTCACACTCTGCGCCGCTTAAAGCGCTATTCGCAGAAACCCAACAAAAAATA TCAGCAAGCGACAATGCAGACACGCAAGAGGCTTATCTTCCAGGGCTGTTAAGCCGCGCCCAAATTCAGGCGTTAAAGAT AGCGGCCAATCAAACTTTGGGGCAGATCTCAGGCCCACCCGGAACAGGTAAAAGTTACACCATAGCCACAGTGGCGGCGG AGCAGGTATTAAGGGGGAAATCTGTCCTCATCGTCGCCCACACAGATGTTGCTGTTGATGTGATTGCCGATAAGTTAGAG CAACAATTCCAGCTAGGTAGCAGTCTTATCCGAGCCGGCTCGCCGCAGTTTATTAAAGTCCTTAAAAACCAGATAGATGA AATGCTCCATGGTCAGCACCCAGCGACTGATGAAACCATTTCAGATATCTTACTACTCAATGCAAAACAGCAACTTAATA CTGTGGCCCGTGAGCAAACCAAAATGGAAGCCAGTTTTATACACCATTGCCGCCATGCCATACGTCGCGGCCAAAAACTG GCGACCTTACAACAAGGACAATCGCGCTGGCGCTTAGGGTTTTACAACTGGGCATACCGTGCGGGGATCAAACAATTTGC CCAGCAATGGAATGTGCTTGATAAATTAACGACACTGATAGCGCAAAAAGAAAGCTTAAGTCTCAAATACTTACAATTGG CCACTCACTATCGATTAAACCAATTACTCAAACATAAGCGCAGTACGCTGGTGAGTTTTGCCAGTGCACTTCGCGCTCGG CAGTCCGCTAAGCAACTCGAAGGTTTCTACAAAACGGATTTTGATGCCCTAAAACAAACCTTTCCCATTTGGTTATCTAG CCTTGCCAGCTTACATAAAGTGCTCCCTATGGAGCAGCAAATGTTTGATTTAGTGATTATTGATGAAGCCACTCAAGCCA ATATTGCCGCATGTTTACCGGCCTTGCAGCGAGCCAAGGCGGCATTGGTGGTGGGCGACAGCAAACAACTGCGACATTTC TCGTTTCTATCTCGCGCAAAACAAACCCAAATCCAGACCCAGCTCGGACTCGCGCAGGATTGTCACGGGTTAATGAGCTA CCGTGATGCGAGCATGCTCGACTTAGTATCACAATCCCTCACGAGCCAGTCCCAAGTGGTATTTTTAAATGAGCATTTCC GTAGCAAACCTGAGCTGATCCAATTTAGTAATCAGCAGTTTTATCAAGGCATACTGAAAATTATGCAGCACAGACCCTGC ACGAGTTCAGGACACTTACATAGAATACAAGTGACAGGCGCGCGGGATAGCAAGGGAGTTAACAGACTAGAAGCGGAGGC ATTAATTCAAAAGTTATCACAACTGATTGATGACCAAATGAATACATTAGTGCCTTCCAGCATTGGTGTGCTCTCCTGTT TTCGCAATCAAACTGAGTATTTATCCCAGCAAATCATGGCGCGCTTTAGCGCACAACAAATAGAACGTCATCAATTGAGG ATTGCCACGCCCTTTGGTTTTCAAGGGGAAGAGCGCGATATCATGCTGCTGTCGTTTAGCATTACTGCCAAAGACAGCCG AGCTGCGGTGTATTTAAATCGAGCCGATATGTTCAACGTCGCAATTACCCGAGCCAAACAGGCGCAATGGCTATTTTTAT CGGTACAAGAGCATGAACTCCCCAACAATAATTTACTGGCAACTTACTTAGCATCGGCGGGCCAATTTCAAGCAGCACAT AATTATGTCGATGCACTCGATACCTTTGGCCAGTCGGTAGCACACGCGATTGAAGAAAAAGGGATTACAGTATGGCGCGC CTACCATATGGCGGGGCTCGAACTGGATATTCTGTGCCGTTATGGTGACCAATATTTAGCGATAGATTTAATCGGTTACC CAGGACCTTGGGCGGATTTTTTCGATATTGAACTGTATAAACTCTTACAGCGCGCAGGCATTAAACTTATCCCCGTGAGC TATGGGCTTTGGTGTCAGCAGCGGGAACTGTGTATCCAACAAATCTGCAATCAATTTAAGCTAGAACAATCGAATTAA
Upstream 100 bases:
>100_bases CGACTATGGATAAACCATCCACAGACGGTACAAACCTTGTTCGACTTATGCGATTGGGTTACTCTCGCATCGCCAATTAA GCCTTTGGGATGGATAGGAT
Downstream 100 bases:
>100_bases GCAATAAGCATCTCACGGATGACATCCCAGTTGACGACCGATGAAATAGGCCAAGACTGAACGTTGGAGGTAGAACAAAA TATCCCCTGCACTGGCTAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 905; Mature: 905
Protein sequence:
>905_residues MQGILNYYKQCFQHDSAEINLWSSHKLAEQEKLLLQHEDELSSGFLPRLPVPFAQASALMARSALYLREKVLLHCCLFFC GTVELNGEKRKVVTPLLYRECQLQADGDNIYLLGNDTFSGQGPFTINEALLEKLVVEGHSLSQELRDNPTDVSGWIAWLR AGQADVDTSHLLHFPKLIDEAEFTSLCRKRGQFMVSRSQIILAERSLASRGILHELDKLITAPSHSAPLKALFAETQQKI SASDNADTQEAYLPGLLSRAQIQALKIAANQTLGQISGPPGTGKSYTIATVAAEQVLRGKSVLIVAHTDVAVDVIADKLE QQFQLGSSLIRAGSPQFIKVLKNQIDEMLHGQHPATDETISDILLLNAKQQLNTVAREQTKMEASFIHHCRHAIRRGQKL ATLQQGQSRWRLGFYNWAYRAGIKQFAQQWNVLDKLTTLIAQKESLSLKYLQLATHYRLNQLLKHKRSTLVSFASALRAR QSAKQLEGFYKTDFDALKQTFPIWLSSLASLHKVLPMEQQMFDLVIIDEATQANIAACLPALQRAKAALVVGDSKQLRHF SFLSRAKQTQIQTQLGLAQDCHGLMSYRDASMLDLVSQSLTSQSQVVFLNEHFRSKPELIQFSNQQFYQGILKIMQHRPC TSSGHLHRIQVTGARDSKGVNRLEAEALIQKLSQLIDDQMNTLVPSSIGVLSCFRNQTEYLSQQIMARFSAQQIERHQLR IATPFGFQGEERDIMLLSFSITAKDSRAAVYLNRADMFNVAITRAKQAQWLFLSVQEHELPNNNLLATYLASAGQFQAAH NYVDALDTFGQSVAHAIEEKGITVWRAYHMAGLELDILCRYGDQYLAIDLIGYPGPWADFFDIELYKLLQRAGIKLIPVS YGLWCQQRELCIQQICNQFKLEQSN
Sequences:
>Translated_905_residues MQGILNYYKQCFQHDSAEINLWSSHKLAEQEKLLLQHEDELSSGFLPRLPVPFAQASALMARSALYLREKVLLHCCLFFC GTVELNGEKRKVVTPLLYRECQLQADGDNIYLLGNDTFSGQGPFTINEALLEKLVVEGHSLSQELRDNPTDVSGWIAWLR AGQADVDTSHLLHFPKLIDEAEFTSLCRKRGQFMVSRSQIILAERSLASRGILHELDKLITAPSHSAPLKALFAETQQKI SASDNADTQEAYLPGLLSRAQIQALKIAANQTLGQISGPPGTGKSYTIATVAAEQVLRGKSVLIVAHTDVAVDVIADKLE QQFQLGSSLIRAGSPQFIKVLKNQIDEMLHGQHPATDETISDILLLNAKQQLNTVAREQTKMEASFIHHCRHAIRRGQKL ATLQQGQSRWRLGFYNWAYRAGIKQFAQQWNVLDKLTTLIAQKESLSLKYLQLATHYRLNQLLKHKRSTLVSFASALRAR QSAKQLEGFYKTDFDALKQTFPIWLSSLASLHKVLPMEQQMFDLVIIDEATQANIAACLPALQRAKAALVVGDSKQLRHF SFLSRAKQTQIQTQLGLAQDCHGLMSYRDASMLDLVSQSLTSQSQVVFLNEHFRSKPELIQFSNQQFYQGILKIMQHRPC TSSGHLHRIQVTGARDSKGVNRLEAEALIQKLSQLIDDQMNTLVPSSIGVLSCFRNQTEYLSQQIMARFSAQQIERHQLR IATPFGFQGEERDIMLLSFSITAKDSRAAVYLNRADMFNVAITRAKQAQWLFLSVQEHELPNNNLLATYLASAGQFQAAH NYVDALDTFGQSVAHAIEEKGITVWRAYHMAGLELDILCRYGDQYLAIDLIGYPGPWADFFDIELYKLLQRAGIKLIPVS YGLWCQQRELCIQQICNQFKLEQSN >Mature_905_residues MQGILNYYKQCFQHDSAEINLWSSHKLAEQEKLLLQHEDELSSGFLPRLPVPFAQASALMARSALYLREKVLLHCCLFFC GTVELNGEKRKVVTPLLYRECQLQADGDNIYLLGNDTFSGQGPFTINEALLEKLVVEGHSLSQELRDNPTDVSGWIAWLR AGQADVDTSHLLHFPKLIDEAEFTSLCRKRGQFMVSRSQIILAERSLASRGILHELDKLITAPSHSAPLKALFAETQQKI SASDNADTQEAYLPGLLSRAQIQALKIAANQTLGQISGPPGTGKSYTIATVAAEQVLRGKSVLIVAHTDVAVDVIADKLE QQFQLGSSLIRAGSPQFIKVLKNQIDEMLHGQHPATDETISDILLLNAKQQLNTVAREQTKMEASFIHHCRHAIRRGQKL ATLQQGQSRWRLGFYNWAYRAGIKQFAQQWNVLDKLTTLIAQKESLSLKYLQLATHYRLNQLLKHKRSTLVSFASALRAR QSAKQLEGFYKTDFDALKQTFPIWLSSLASLHKVLPMEQQMFDLVIIDEATQANIAACLPALQRAKAALVVGDSKQLRHF SFLSRAKQTQIQTQLGLAQDCHGLMSYRDASMLDLVSQSLTSQSQVVFLNEHFRSKPELIQFSNQQFYQGILKIMQHRPC TSSGHLHRIQVTGARDSKGVNRLEAEALIQKLSQLIDDQMNTLVPSSIGVLSCFRNQTEYLSQQIMARFSAQQIERHQLR IATPFGFQGEERDIMLLSFSITAKDSRAAVYLNRADMFNVAITRAKQAQWLFLSVQEHELPNNNLLATYLASAGQFQAAH NYVDALDTFGQSVAHAIEEKGITVWRAYHMAGLELDILCRYGDQYLAIDLIGYPGPWADFFDIELYKLLQRAGIKLIPVS YGLWCQQRELCIQQICNQFKLEQSN
Specific function: Unknown
COG id: COG1112
COG function: function code L; Superfamily I DNA and RNA helicases and helicase subunits
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA2/NAM7 helicase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 101924; Mature: 101924
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: PS00758 ARGE_DAPE_CPG2_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGILNYYKQCFQHDSAEINLWSSHKLAEQEKLLLQHEDELSSGFLPRLPVPFAQASALM CCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHH ARSALYLREKVLLHCCLFFCGTVELNGEKRKVVTPLLYRECQLQADGDNIYLLGNDTFSG HHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHEEEECCCEEEEEECCCCCC QGPFTINEALLEKLVVEGHSLSQELRDNPTDVSGWIAWLRAGQADVDTSHLLHFPKLIDE CCCEEHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCH AEFTSLCRKRGQFMVSRSQIILAERSLASRGILHELDKLITAPSHSAPLKALFAETQQKI HHHHHHHHHCCCEEEECCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH SASDNADTQEAYLPGLLSRAQIQALKIAANQTLGQISGPPGTGKSYTIATVAAEQVLRGK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCEEEHHHHHHHHHCCC SVLIVAHTDVAVDVIADKLEQQFQLGSSLIRAGSPQFIKVLKNQIDEMLHGQHPATDETI CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHH SDILLLNAKQQLNTVAREQTKMEASFIHHCRHAIRRGQKLATLQQGQSRWRLGFYNWAYR HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEECHHHHHHH AGIKQFAQQWNVLDKLTTLIAQKESLSLKYLQLATHYRLNQLLKHKRSTLVSFASALRAR HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSAKQLEGFYKTDFDALKQTFPIWLSSLASLHKVLPMEQQMFDLVIIDEATQANIAACLP HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCHHHHHHHHH ALQRAKAALVVGDSKQLRHFSFLSRAKQTQIQTQLGLAQDCHGLMSYRDASMLDLVSQSL HHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH TSQSQVVFLNEHFRSKPELIQFSNQQFYQGILKIMQHRPCTSSGHLHRIQVTGARDSKGV CCCCEEEEEEHHCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCC NRLEAEALIQKLSQLIDDQMNTLVPSSIGVLSCFRNQTEYLSQQIMARFSAQQIERHQLR HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE IATPFGFQGEERDIMLLSFSITAKDSRAAVYLNRADMFNVAITRAKQAQWLFLSVQEHEL EECCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCHHHHHHHHHCCCCEEEEEEEECCCC PNNNLLATYLASAGQFQAAHNYVDALDTFGQSVAHAIEEKGITVWRAYHMAGLELDILCR CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHCCCEEEEEEE YGDQYLAIDLIGYPGPWADFFDIELYKLLQRAGIKLIPVSYGLWCQQRELCIQQICNQFK CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHC LEQSN CCCCC >Mature Secondary Structure MQGILNYYKQCFQHDSAEINLWSSHKLAEQEKLLLQHEDELSSGFLPRLPVPFAQASALM CCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHH ARSALYLREKVLLHCCLFFCGTVELNGEKRKVVTPLLYRECQLQADGDNIYLLGNDTFSG HHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHEEEECCCEEEEEECCCCCC QGPFTINEALLEKLVVEGHSLSQELRDNPTDVSGWIAWLRAGQADVDTSHLLHFPKLIDE CCCEEHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCH AEFTSLCRKRGQFMVSRSQIILAERSLASRGILHELDKLITAPSHSAPLKALFAETQQKI HHHHHHHHHCCCEEEECCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH SASDNADTQEAYLPGLLSRAQIQALKIAANQTLGQISGPPGTGKSYTIATVAAEQVLRGK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCEEEHHHHHHHHHCCC SVLIVAHTDVAVDVIADKLEQQFQLGSSLIRAGSPQFIKVLKNQIDEMLHGQHPATDETI CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHH SDILLLNAKQQLNTVAREQTKMEASFIHHCRHAIRRGQKLATLQQGQSRWRLGFYNWAYR HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEECHHHHHHH AGIKQFAQQWNVLDKLTTLIAQKESLSLKYLQLATHYRLNQLLKHKRSTLVSFASALRAR HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSAKQLEGFYKTDFDALKQTFPIWLSSLASLHKVLPMEQQMFDLVIIDEATQANIAACLP HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCHHHHHHHHH ALQRAKAALVVGDSKQLRHFSFLSRAKQTQIQTQLGLAQDCHGLMSYRDASMLDLVSQSL HHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH TSQSQVVFLNEHFRSKPELIQFSNQQFYQGILKIMQHRPCTSSGHLHRIQVTGARDSKGV CCCCEEEEEEHHCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCC NRLEAEALIQKLSQLIDDQMNTLVPSSIGVLSCFRNQTEYLSQQIMARFSAQQIERHQLR HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE IATPFGFQGEERDIMLLSFSITAKDSRAAVYLNRADMFNVAITRAKQAQWLFLSVQEHEL EECCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCHHHHHHHHHCCCCEEEEEEEECCCC PNNNLLATYLASAGQFQAAHNYVDALDTFGQSVAHAIEEKGITVWRAYHMAGLELDILCR CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHCCCEEEEEEE YGDQYLAIDLIGYPGPWADFFDIELYKLLQRAGIKLIPVSYGLWCQQRELCIQQICNQFK CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHC LEQSN CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7569993; 1945886; 8253680 [H]