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The map label for this gene is 126175891

Identifier: 126175891

GI number: 126175891

Start: 4319578

End: 4320189

Strand: Direct

Name: 126175891

Synonym: Sbal_3697

Alternate gene names: NA

Gene position: 4319578-4320189 (Clockwise)

Preceding gene: 126175888

Following gene: 126175896

Centisome position: 84.25

GC content: 47.06

Gene sequence:

>612_bases
ATGCTCATGGATAGAGGCGTGCTGGTACGCTGGAACGATGAAAAGGGATTTGGCTTTATTCAGCCTGAAAAAAACGCAGC
CCAAGATGTGTTTATTCACATTTCAGTGCTGAAAAAGATGGCGAGAAAACCCATAGTGGGTGATAGCATTCTGTTTCAAA
CTGAAGTGCAAAATGACGGCAAAAGAAAAGCGGTTATCGCCTCGATTGAAGGCGTTGCGGTTATTGCCGCTAGCTCAGCG
CCACGCTCCCATTCCCGCATTACAAGCACCAATAGAAACGACAACGCTCATCGTTCACGCAAATCGCCCTTTAGCACTCT
CATTCCGCTACTGATAATCGTAGCAATAGGTATTTTTGGTTTTAAACAATACCAAGCAGTCAATGAAGTGCCAGTACTCA
CAAATGGTGACATTGAGCAAATGCCCATGGATGATACTCAAGCGCACACACAAGCACCTGCGACATCAGGATTCCAATGT
GAGGCGGGTAAAACCCATTGCAGCCATATGAGCTCCTGCGCAGAAGCGACGTTCTATATCCAACATTGCCCCAATACTCA
AATAGATGGCGACGGTGATGGCGTACCCTGTGAGAGCCAATGGTGCCGATAA

Upstream 100 bases:

>100_bases
AACCGGTTTGTTCCTCCAAGGGGATAAATCGGATCGGCTCAAGTAAGTATTGATATTCAATAACTAAAAATATTAAGCGG
TTAAATTAAGGACATAGAAA

Downstream 100 bases:

>100_bases
GAAGCTCGACGAGTTGATGCTCTGAGGATGCGAACTCAGCACTAACCTGCTGTTATGCTATTTGGTGGTTGATTGAGTGA
GTGATTTATTTATCAGCGGC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: Cold Shock Domain-Contain Protein; Cold-Shock Protein; Excalibur Domain Protein; Cold Shock Domain-Containing Protein CspD; Cold Shock Domain-Containing Protein; Cold Shock Family Protein; Cold Shock/Excaliber Domain-Containing Protein CspD

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MLMDRGVLVRWNDEKGFGFIQPEKNAAQDVFIHISVLKKMARKPIVGDSILFQTEVQNDGKRKAVIASIEGVAVIAASSA
PRSHSRITSTNRNDNAHRSRKSPFSTLIPLLIIVAIGIFGFKQYQAVNEVPVLTNGDIEQMPMDDTQAHTQAPATSGFQC
EAGKTHCSHMSSCAEATFYIQHCPNTQIDGDGDGVPCESQWCR

Sequences:

>Translated_203_residues
MLMDRGVLVRWNDEKGFGFIQPEKNAAQDVFIHISVLKKMARKPIVGDSILFQTEVQNDGKRKAVIASIEGVAVIAASSA
PRSHSRITSTNRNDNAHRSRKSPFSTLIPLLIIVAIGIFGFKQYQAVNEVPVLTNGDIEQMPMDDTQAHTQAPATSGFQC
EAGKTHCSHMSSCAEATFYIQHCPNTQIDGDGDGVPCESQWCR
>Mature_203_residues
MLMDRGVLVRWNDEKGFGFIQPEKNAAQDVFIHISVLKKMARKPIVGDSILFQTEVQNDGKRKAVIASIEGVAVIAASSA
PRSHSRITSTNRNDNAHRSRKSPFSTLIPLLIIVAIGIFGFKQYQAVNEVPVLTNGDIEQMPMDDTQAHTQAPATSGFQC
EAGKTHCSHMSSCAEATFYIQHCPNTQIDGDGDGVPCESQWCR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22258; Mature: 22258

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMDRGVLVRWNDEKGFGFIQPEKNAAQDVFIHISVLKKMARKPIVGDSILFQTEVQNDG
CCCCCCEEEEECCCCCCEEECCCCCCCHHHEEHHHHHHHHHHCCCCCCCEEEEEECCCCC
KRKAVIASIEGVAVIAASSAPRSHSRITSTNRNDNAHRSRKSPFSTLIPLLIIVAIGIFG
CCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHH
FKQYQAVNEVPVLTNGDIEQMPMDDTQAHTQAPATSGFQCEAGKTHCSHMSSCAEATFYI
HHHHHHHCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEECCCCHHHHHHHHHHHHEEEE
QHCPNTQIDGDGDGVPCESQWCR
EECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLMDRGVLVRWNDEKGFGFIQPEKNAAQDVFIHISVLKKMARKPIVGDSILFQTEVQNDG
CCCCCCEEEEECCCCCCEEECCCCCCCHHHEEHHHHHHHHHHCCCCCCCEEEEEECCCCC
KRKAVIASIEGVAVIAASSAPRSHSRITSTNRNDNAHRSRKSPFSTLIPLLIIVAIGIFG
CCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHH
FKQYQAVNEVPVLTNGDIEQMPMDDTQAHTQAPATSGFQCEAGKTHCSHMSSCAEATFYI
HHHHHHHCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEECCCCHHHHHHHHHHHHEEEE
QHCPNTQIDGDGDGVPCESQWCR
EECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA