Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 126175888

GI number: 126175888

Start: 4315819

End: 4317813

Strand: Direct

Name: yciR [C]

Synonym: Sbal_3694

Alternate gene names: 126175888

Gene position: 4315819-4317813 (Clockwise)

Preceding gene: 126175881

Following gene: 126175891

Centisome position: 84.17

GC content: 47.37

Gene sequence:

>1995_bases
ATGGGGACTCAGTTCGCGCGCACATTAGCTATTTTACGGCAACGAACTCGCTCAACCGTTGCTAAGGTTCTGTTGATCAT
CAGCATGTTTATCGGGATTTGTATCGCCCTCGTCGGCCTAGTGTATATTCAAGGCAATATATTTGATGGTGTACGCACCT
ATGTCCGCGGTGAAGGCTTGTGGGCCAAGGCGCAAAAAGATGCGGTACTTTATCTCACCCATTACTCTTATACCCAAAAT
GATGTGGACTTTCAGCGTTATCGTGCAGCGACGAGCGTTATGGAAGGTGATCATCAAGCTAGGCAAGCCCTGCTCGCAAC
GCCAATCGATGAACAGGCCGCCAAACTGGGTTTTATTCAGGGCCTCAATGACGAACGGGATACCGACTCACTGATCTGGT
TCTTCCGTCACTTTCAATCCAATTCCTATATGCGGCAAGCGATTCAGCTGTGGGGCTTAGCGGATCAACGCTTCGAGTTT
GTAATGCAACTCGCCGAGAATATGCGTATTGAAATCAATCAACTGGGTGGCAGGCCCGAAATCCTCGCGCAATACCGCCA
GCAATTGATTGATGCCAATGAAGAATTACTCAGCCTAGAAATTGAATTTTCAGCCGTGCTCAGTGAAGGCGCACGCTGGG
TCAAGCAAATGACCTGGTTGATTAGCCTTGGCGCCCTACTGCTGTTTATCAGTATTGGGATCTTCGCCAGTAGGCAGATC
ATTCGTAACATCGCCAAGTCTGAACGGCAGTTACTGATCAGTGAATCTCGCTTCACTAGCCTGAAAAACTCCGACACCAT
AGGGATTATTTCTTGGCAGCTCGATGGCACCCTCCATGATGCTAATGATCATTTTCTCAATATGCTCAATTTTGACCGTG
CGGATTTAACCTCAGGCTTAATCAACTGGCGCTCAATTACCCCACCTGAATATGAAACACGAGATGCCATTGCGATTGCA
GAGTTAGAACAGTTTGGTCACTGCCAACAATATGAAAAACAACTTATCAGCAAGAGTGGTGCCTTAGTGCCTGTGATGCT
AGCGGCCAGTTTTTTAAATGGCAGCAAATATGAAGGCGTGGCTTACTTTATGGATCTCACCGCCAGTAAACAGGCCGAAG
ATAAACTCAGACTCGCGGCAACCGTGTTTAATGCCAGCACCGACGGCATAATGATCACCGATCCCCTGCTGAATATTATT
TCTATCAATCAAGCCTTTACTCATATAACTGGCTTTACCCAGCAGGATTTGCACGGCGATGCCAACCACTTCCTCAATGA
CGGGCACAATAGTGATGACGCCCGCCAAGCCATGCTAAATCTGCTTCAACAGGGCGAGCAATGGCAGGGGGAATTACTCA
AACAAGTTAAATCGGGCGACTTACTGCCGCTCAGTGTGCGCATCAATACAGTGCGCAATGAGCATGACCGTCTGACTCAT
TTTGTCATTGTGATTACCGACATTGCCGAACGCAAGGCAGAGGAGGAATATCTGCGTCATATCGCCCATCACGATGCCCT
GACTAACCTGCCTAATCGTGTGTTATTCCACACTAAACTTGAACAAGCCATAGTGCACGCCCAACGGTCTGATGATATTT
TTGCAATCCTTTTCTTAGACTTAGATAACTTTAAGCCAGTGAATGACCAGTTTGGTCACGATGTGGGAGATAAACTATTA
CAGGAAGTCGCGAAACGGCTTTCATCTGGGATTCGCCAAATGGATACCATCACTCGCCTCGGAGGCGATGAGTTTGTGAT
CCTGCTAGAACACCTTGCCAATACCCACAGAATCGGCCAACTGATCCCTCAGATAAGCCAAGCTATTTGCGCGCCTTACA
CTATCAATGGTCATCAAATCCATATCGGTGTCAGCGTCGGTTTGGCGATTTATCCAGAAAACGGCACAGATGCAAAAAGC
CTGATCAATCATGCTGATCAGGCCATGTATTCGATGAAAAAAACCAATAAGACTCACCTGCAAAGCCTAGGTTAA

Upstream 100 bases:

>100_bases
ACAAAATAACCTTCAAAAATAGCAGGCAAATTGATTCACTCCTTCTCCCTAAGCTGCCCACTCTAGAGTGGCGCCACTGT
ATTGGTTGTGGAGCGTAAGG

Downstream 100 bases:

>100_bases
GCCTTACTGGCTGGCGAGTTTACGCCAACGTAATCCATCACGAATCACCTCATACCCAGGGAACATAGCGGCAATCACTA
GACTATAACTGAGCCATTTA

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 664; Mature: 663

Protein sequence:

>664_residues
MGTQFARTLAILRQRTRSTVAKVLLIISMFIGICIALVGLVYIQGNIFDGVRTYVRGEGLWAKAQKDAVLYLTHYSYTQN
DVDFQRYRAATSVMEGDHQARQALLATPIDEQAAKLGFIQGLNDERDTDSLIWFFRHFQSNSYMRQAIQLWGLADQRFEF
VMQLAENMRIEINQLGGRPEILAQYRQQLIDANEELLSLEIEFSAVLSEGARWVKQMTWLISLGALLLFISIGIFASRQI
IRNIAKSERQLLISESRFTSLKNSDTIGIISWQLDGTLHDANDHFLNMLNFDRADLTSGLINWRSITPPEYETRDAIAIA
ELEQFGHCQQYEKQLISKSGALVPVMLAASFLNGSKYEGVAYFMDLTASKQAEDKLRLAATVFNASTDGIMITDPLLNII
SINQAFTHITGFTQQDLHGDANHFLNDGHNSDDARQAMLNLLQQGEQWQGELLKQVKSGDLLPLSVRINTVRNEHDRLTH
FVIVITDIAERKAEEEYLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDDIFAILFLDLDNFKPVNDQFGHDVGDKLL
QEVAKRLSSGIRQMDTITRLGGDEFVILLEHLANTHRIGQLIPQISQAICAPYTINGHQIHIGVSVGLAIYPENGTDAKS
LINHADQAMYSMKKTNKTHLQSLG

Sequences:

>Translated_664_residues
MGTQFARTLAILRQRTRSTVAKVLLIISMFIGICIALVGLVYIQGNIFDGVRTYVRGEGLWAKAQKDAVLYLTHYSYTQN
DVDFQRYRAATSVMEGDHQARQALLATPIDEQAAKLGFIQGLNDERDTDSLIWFFRHFQSNSYMRQAIQLWGLADQRFEF
VMQLAENMRIEINQLGGRPEILAQYRQQLIDANEELLSLEIEFSAVLSEGARWVKQMTWLISLGALLLFISIGIFASRQI
IRNIAKSERQLLISESRFTSLKNSDTIGIISWQLDGTLHDANDHFLNMLNFDRADLTSGLINWRSITPPEYETRDAIAIA
ELEQFGHCQQYEKQLISKSGALVPVMLAASFLNGSKYEGVAYFMDLTASKQAEDKLRLAATVFNASTDGIMITDPLLNII
SINQAFTHITGFTQQDLHGDANHFLNDGHNSDDARQAMLNLLQQGEQWQGELLKQVKSGDLLPLSVRINTVRNEHDRLTH
FVIVITDIAERKAEEEYLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDDIFAILFLDLDNFKPVNDQFGHDVGDKLL
QEVAKRLSSGIRQMDTITRLGGDEFVILLEHLANTHRIGQLIPQISQAICAPYTINGHQIHIGVSVGLAIYPENGTDAKS
LINHADQAMYSMKKTNKTHLQSLG
>Mature_663_residues
GTQFARTLAILRQRTRSTVAKVLLIISMFIGICIALVGLVYIQGNIFDGVRTYVRGEGLWAKAQKDAVLYLTHYSYTQND
VDFQRYRAATSVMEGDHQARQALLATPIDEQAAKLGFIQGLNDERDTDSLIWFFRHFQSNSYMRQAIQLWGLADQRFEFV
MQLAENMRIEINQLGGRPEILAQYRQQLIDANEELLSLEIEFSAVLSEGARWVKQMTWLISLGALLLFISIGIFASRQII
RNIAKSERQLLISESRFTSLKNSDTIGIISWQLDGTLHDANDHFLNMLNFDRADLTSGLINWRSITPPEYETRDAIAIAE
LEQFGHCQQYEKQLISKSGALVPVMLAASFLNGSKYEGVAYFMDLTASKQAEDKLRLAATVFNASTDGIMITDPLLNIIS
INQAFTHITGFTQQDLHGDANHFLNDGHNSDDARQAMLNLLQQGEQWQGELLKQVKSGDLLPLSVRINTVRNEHDRLTHF
VIVITDIAERKAEEEYLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDDIFAILFLDLDNFKPVNDQFGHDVGDKLLQ
EVAKRLSSGIRQMDTITRLGGDEFVILLEHLANTHRIGQLIPQISQAICAPYTINGHQIHIGVSVGLAIYPENGTDAKSL
INHADQAMYSMKKTNKTHLQSLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=285, Percent_Identity=30.5263157894737, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1788381, Length=421, Percent_Identity=25.41567695962, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=33.1460674157303, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=36.3636363636364, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=31.5151515151515, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=37.012987012987, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI87081881, Length=186, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=27.906976744186, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=32.0512820512821, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=31.3253012048193, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=135, Percent_Identity=34.0740740740741, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI1788085, Length=92, Percent_Identity=35.8695652173913, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 74939; Mature: 74807

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTQFARTLAILRQRTRSTVAKVLLIISMFIGICIALVGLVYIQGNIFDGVRTYVRGEGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
WAKAQKDAVLYLTHYSYTQNDVDFQRYRAATSVMEGDHQARQALLATPIDEQAAKLGFIQ
EEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
GLNDERDTDSLIWFFRHFQSNSYMRQAIQLWGLADQRFEFVMQLAENMRIEINQLGGRPE
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCHH
ILAQYRQQLIDANEELLSLEIEFSAVLSEGARWVKQMTWLISLGALLLFISIGIFASRQI
HHHHHHHHHHCCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNIAKSERQLLISESRFTSLKNSDTIGIISWQLDGTLHDANDHFLNMLNFDRADLTSGL
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEECCCHHHHHHHCCCHHHHHHHH
INWRSITPPEYETRDAIAIAELEQFGHCQQYEKQLISKSGALVPVMLAASFLNGSKYEGV
CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCE
AYFMDLTASKQAEDKLRLAATVFNASTDGIMITDPLLNIISINQAFTHITGFTQQDLHGD
EEEEECCCCCCHHHHHHHHHHEECCCCCCEEEECHHHHHHHHHHHHHHHCCCCHHHCCCC
ANHFLNDGHNSDDARQAMLNLLQQGEQWQGELLKQVKSGDLLPLSVRINTVRNEHDRLTH
HHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHEE
FVIVITDIAERKAEEEYLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDDIFAILFLD
EEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEE
LDNFKPVNDQFGHDVGDKLLQEVAKRLSSGIRQMDTITRLGGDEFVILLEHLANTHRIGQ
CCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LIPQISQAICAPYTINGHQIHIGVSVGLAIYPENGTDAKSLINHADQAMYSMKKTNKTHL
HHHHHHHHHCCCEEECCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHH
QSLG
HCCC
>Mature Secondary Structure 
GTQFARTLAILRQRTRSTVAKVLLIISMFIGICIALVGLVYIQGNIFDGVRTYVRGEGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
WAKAQKDAVLYLTHYSYTQNDVDFQRYRAATSVMEGDHQARQALLATPIDEQAAKLGFIQ
EEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
GLNDERDTDSLIWFFRHFQSNSYMRQAIQLWGLADQRFEFVMQLAENMRIEINQLGGRPE
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCHH
ILAQYRQQLIDANEELLSLEIEFSAVLSEGARWVKQMTWLISLGALLLFISIGIFASRQI
HHHHHHHHHHCCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNIAKSERQLLISESRFTSLKNSDTIGIISWQLDGTLHDANDHFLNMLNFDRADLTSGL
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEECCCHHHHHHHCCCHHHHHHHH
INWRSITPPEYETRDAIAIAELEQFGHCQQYEKQLISKSGALVPVMLAASFLNGSKYEGV
CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCE
AYFMDLTASKQAEDKLRLAATVFNASTDGIMITDPLLNIISINQAFTHITGFTQQDLHGD
EEEEECCCCCCHHHHHHHHHHEECCCCCCEEEECHHHHHHHHHHHHHHHCCCCHHHCCCC
ANHFLNDGHNSDDARQAMLNLLQQGEQWQGELLKQVKSGDLLPLSVRINTVRNEHDRLTH
HHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHEE
FVIVITDIAERKAEEEYLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDDIFAILFLD
EEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEE
LDNFKPVNDQFGHDVGDKLLQEVAKRLSSGIRQMDTITRLGGDEFVILLEHLANTHRIGQ
CCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LIPQISQAICAPYTINGHQIHIGVSVGLAIYPENGTDAKSLINHADQAMYSMKKTNKTHL
HHHHHHHHHCCCEEECCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHH
QSLG
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]