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The map label for this gene is tfaD [H]

Identifier: 126175796

GI number: 126175796

Start: 4229447

End: 4231444

Strand: Reverse

Name: tfaD [H]

Synonym: Sbal_3601

Alternate gene names: 126175796

Gene position: 4231444-4229447 (Counterclockwise)

Preceding gene: 126175797

Following gene: 126175795

Centisome position: 82.53

GC content: 50.05

Gene sequence:

>1998_bases
ATGAGTATATCGGCCGCGCAGATTAAAAATCTGAAAGCCGCCGTTGCTGCTGGGCTGCGTTCGTTCTATCGCCCACCCAT
GCTCACCTGTTCTGAATATGCCGACGAGCACTTTTACATGTCGTCGGAGTCCTCTTACACCGAGGGTAAGTGGGAAAGTT
TACCGTTTCAAATTGGCATTCTTAATGCCATGGGTAACGACCAAATCAGCACGCTTAACTTAATGAAGTCAGCGCGTGTC
GGTTACACCAAAATGCTGATGGCTAACGCTGCTTACAAGATTGAACACAAAAAGCGCAACGTGTTGATCTATCAGCCTCG
TGATGGTCAAGCCAAAACCTTCATGAAAAAGCACGTTGAAACGGCGATTCGTGACATCCCTGTTTGGCGCGCGCTTGCAC
CTTGGATGGGTCGCAAACATAAAGACAGCACGCTAGAAGATAAAATATTCACCAATGGCAAAACGCTGATGGTGCGCGGT
GGTACCGCTGCAGCTAACTATCGCGAAATCTCCACCGATGATGTGATCTACGATGAGCTAGCGGGTTTTGATGAATCCAT
CGAGCACGAAGGTAACGCCACATCGCTCGGTGATACTCGTATCGAACTGTCGATGTTTCCTAAGTCGATTCGCGGTTCAA
CGCCTAAAGTGCTCGGTACCTGCCAGATTGAAAAAGCCTGCAGCGAATCACCGCACTATTTTAGGTTCAACTTACCTTGC
CCACACTGCGACGAACTGCAGGATTTAAAGTGGGGCGGCCCCGAAGAAGCCTTTGGGATTAAGTGGCATAAAAATGCCAA
GGGAGAACATGACCCAAGCACAGCCTATTATCTGTGTGAGCACTGTGGTTGCTGTATCGAAAACAATCAGCTCGATGATA
TGGAGCTGCACCCAAGCGCAGTTTGGATATGCGAAAACACCGGCATCCGCACTAAAGACTTTTTAGATTTTTATGATGCC
GACGGAAACGACATCACCACGCCGCCCAATATCTCGATTCATATCTGGTCGGCCTATAACTCTCTCAACAGCTGGGCGAA
ACTGGTTACTGAGTTCTTTAAAGCCAAAGGCGATAAAGAAAAGCTGCAGACTTTCGTCAACACTAAGTTAGGCCAGCCAT
GGGATAACGACAACGGCGAACGCTTAGAGTGGGAAGAATTAGCGAAGCGCCGCGAAATGTACCCGAGTGGCAAAGTACCT
AACTGGGTGGTGTATTTAACGGCAGGTATCGACACCCAAGATAACCGTTACGAAGGCCGTGTTTGGGGCTGGGGTGCGGG
TAAAGAGGCGGCGCTAATTGACCGCTTTATTCTCCATGGTGATCCCGCTGATCAAGTGCTTAAAGACAAAGTGGCTGAGC
GTATTGCGCAAAGCTATGCCCGTGCTGATGGCGTTGTGCTCAATATCGGCGTAGTGGGTTGGGATTCAGGCGGCCACTAC
ACCGATGACGTTTACGCCATGAGTAAAAAGCTTGGGCTAATGCGGGTTATACCCATTAGAGGTGCCAACGTTTACGGCAA
GCCGATCGCCAACTTCCCCCGTAAGCGAACCGCCAAAGGTGTTTACTTAACGGAGGTTGGTACCGACAACGCCAAAGAGC
TGTTGATGTCGATGTTGCGAATTGCCCCTGATGTTGATGTGCGTAAGCCTGGTGCAATTCACTTCCCGTTAAACGAAGCG
GTATGTGATGACGTTGAGCTGCAACAGCTCACCAGCGAACGCAAGGTGCCGGTGCGCCAAAACGGGCGGATCATCTATAA
ATGGGACAACCAAAAGCGCCGCAACGAGGCGTTAGATTGTTTCGTTTACGCCTTGGCCGCGTTGTATATCGCGATAGAAA
AATTCGGCATCAATCTCGACAAGCTTTCACAAGTTACCCCGATCGCCATATCAAGCGACCAACCCAAAGAACCAAAACCC
AAAGCCGTAAAACAGGCCAATGCAAATGCTGCTTACCTAAACGGTGGCGGTGGTGGCAGTTCTGGCGGTTGGCTGTAG

Upstream 100 bases:

>100_bases
CCCGACATTCCAGAACGCACAATCGACGCTATCAAAGCGGAGGTGATTAAAAGCCAAAACACCGCCGCCGATCTTGCGGA
GGGCATTGAGGGTTTATTAG

Downstream 100 bases:

>100_bases
TTAATGCCAATAAAGCCAAGGATAACAGCATGACCAAAACCCAATGCCAAGAGATGATCGATGCGTACTTTAAGGCCGAG
CTTGATGTGTTGGCAGGTAA

Product: phage terminase GpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 665; Mature: 664

Protein sequence:

>665_residues
MSISAAQIKNLKAAVAAGLRSFYRPPMLTCSEYADEHFYMSSESSYTEGKWESLPFQIGILNAMGNDQISTLNLMKSARV
GYTKMLMANAAYKIEHKKRNVLIYQPRDGQAKTFMKKHVETAIRDIPVWRALAPWMGRKHKDSTLEDKIFTNGKTLMVRG
GTAAANYREISTDDVIYDELAGFDESIEHEGNATSLGDTRIELSMFPKSIRGSTPKVLGTCQIEKACSESPHYFRFNLPC
PHCDELQDLKWGGPEEAFGIKWHKNAKGEHDPSTAYYLCEHCGCCIENNQLDDMELHPSAVWICENTGIRTKDFLDFYDA
DGNDITTPPNISIHIWSAYNSLNSWAKLVTEFFKAKGDKEKLQTFVNTKLGQPWDNDNGERLEWEELAKRREMYPSGKVP
NWVVYLTAGIDTQDNRYEGRVWGWGAGKEAALIDRFILHGDPADQVLKDKVAERIAQSYARADGVVLNIGVVGWDSGGHY
TDDVYAMSKKLGLMRVIPIRGANVYGKPIANFPRKRTAKGVYLTEVGTDNAKELLMSMLRIAPDVDVRKPGAIHFPLNEA
VCDDVELQQLTSERKVPVRQNGRIIYKWDNQKRRNEALDCFVYALAALYIAIEKFGINLDKLSQVTPIAISSDQPKEPKP
KAVKQANANAAYLNGGGGGSSGGWL

Sequences:

>Translated_665_residues
MSISAAQIKNLKAAVAAGLRSFYRPPMLTCSEYADEHFYMSSESSYTEGKWESLPFQIGILNAMGNDQISTLNLMKSARV
GYTKMLMANAAYKIEHKKRNVLIYQPRDGQAKTFMKKHVETAIRDIPVWRALAPWMGRKHKDSTLEDKIFTNGKTLMVRG
GTAAANYREISTDDVIYDELAGFDESIEHEGNATSLGDTRIELSMFPKSIRGSTPKVLGTCQIEKACSESPHYFRFNLPC
PHCDELQDLKWGGPEEAFGIKWHKNAKGEHDPSTAYYLCEHCGCCIENNQLDDMELHPSAVWICENTGIRTKDFLDFYDA
DGNDITTPPNISIHIWSAYNSLNSWAKLVTEFFKAKGDKEKLQTFVNTKLGQPWDNDNGERLEWEELAKRREMYPSGKVP
NWVVYLTAGIDTQDNRYEGRVWGWGAGKEAALIDRFILHGDPADQVLKDKVAERIAQSYARADGVVLNIGVVGWDSGGHY
TDDVYAMSKKLGLMRVIPIRGANVYGKPIANFPRKRTAKGVYLTEVGTDNAKELLMSMLRIAPDVDVRKPGAIHFPLNEA
VCDDVELQQLTSERKVPVRQNGRIIYKWDNQKRRNEALDCFVYALAALYIAIEKFGINLDKLSQVTPIAISSDQPKEPKP
KAVKQANANAAYLNGGGGGSSGGWL
>Mature_664_residues
SISAAQIKNLKAAVAAGLRSFYRPPMLTCSEYADEHFYMSSESSYTEGKWESLPFQIGILNAMGNDQISTLNLMKSARVG
YTKMLMANAAYKIEHKKRNVLIYQPRDGQAKTFMKKHVETAIRDIPVWRALAPWMGRKHKDSTLEDKIFTNGKTLMVRGG
TAAANYREISTDDVIYDELAGFDESIEHEGNATSLGDTRIELSMFPKSIRGSTPKVLGTCQIEKACSESPHYFRFNLPCP
HCDELQDLKWGGPEEAFGIKWHKNAKGEHDPSTAYYLCEHCGCCIENNQLDDMELHPSAVWICENTGIRTKDFLDFYDAD
GNDITTPPNISIHIWSAYNSLNSWAKLVTEFFKAKGDKEKLQTFVNTKLGQPWDNDNGERLEWEELAKRREMYPSGKVPN
WVVYLTAGIDTQDNRYEGRVWGWGAGKEAALIDRFILHGDPADQVLKDKVAERIAQSYARADGVVLNIGVVGWDSGGHYT
DDVYAMSKKLGLMRVIPIRGANVYGKPIANFPRKRTAKGVYLTEVGTDNAKELLMSMLRIAPDVDVRKPGAIHFPLNEAV
CDDVELQQLTSERKVPVRQNGRIIYKWDNQKRRNEALDCFVYALAALYIAIEKFGINLDKLSQVTPIAISSDQPKEPKPK
AVKQANANAAYLNGGGGGSSGGWL

Specific function: Unknown

COG id: COG5525

COG function: function code R; Bacteriophage tail assembly protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To phage lambda terminase large subunit in the N- terminal section [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003458
- InterPro:   IPR008866 [H]

Pfam domain/function: PF02413 Caudo_TAP; PF05876 Terminase_GpA [H]

EC number: NA

Molecular weight: Translated: 74494; Mature: 74363

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISAAQIKNLKAAVAAGLRSFYRPPMLTCSEYADEHFYMSSESSYTEGKWESLPFQIGI
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCEEEEE
LNAMGNDQISTLNLMKSARVGYTKMLMANAAYKIEHKKRNVLIYQPRDGQAKTFMKKHVE
EECCCCCCHHHHHHHHHHHCCHHHHHHHCCCEEEEECCCCEEEECCCCCCHHHHHHHHHH
TAIRDIPVWRALAPWMGRKHKDSTLEDKIFTNGKTLMVRGGTAAANYREISTDDVIYDEL
HHHHHCHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCEECCCCHHHHHHH
AGFDESIEHEGNATSLGDTRIELSMFPKSIRGSTPKVLGTCQIEKACSESPHYFRFNLPC
CCCCHHHCCCCCCCCCCCCEEEEEECCHHHCCCCCCEEEEEEEHHHHCCCCCEEEEECCC
PHCDELQDLKWGGPEEAFGIKWHKNAKGEHDPSTAYYLCEHCGCCIENNQLDDMELHPSA
CCCCCHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCEECCCCCCCCEECCCE
VWICENTGIRTKDFLDFYDADGNDITTPPNISIHIWSAYNSLNSWAKLVTEFFKAKGDKE
EEEECCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCHH
KLQTFVNTKLGQPWDNDNGERLEWEELAKRREMYPSGKVPNWVVYLTAGIDTQDNRYEGR
HHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCC
VWGWGAGKEAALIDRFILHGDPADQVLKDKVAERIAQSYARADGVVLNIGVVGWDSGGHY
EEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC
TDDVYAMSKKLGLMRVIPIRGANVYGKPIANFPRKRTAKGVYLTEVGTDNAKELLMSMLR
CHHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCHHHCCCCEEEEECCCCCHHHHHHHHHH
IAPDVDVRKPGAIHFPLNEAVCDDVELQQLTSERKVPVRQNGRIIYKWDNQKRRNEALDC
HCCCCCCCCCCEEECCCCHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHH
FVYALAALYIAIEKFGINLDKLSQVTPIAISSDQPKEPKPKAVKQANANAAYLNGGGGGS
HHHHHHHHHHHHHHHCCCHHHHCCCCCEEECCCCCCCCCCHHHHHCCCCEEEEECCCCCC
SGGWL
CCCCC
>Mature Secondary Structure 
SISAAQIKNLKAAVAAGLRSFYRPPMLTCSEYADEHFYMSSESSYTEGKWESLPFQIGI
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCEEEEE
LNAMGNDQISTLNLMKSARVGYTKMLMANAAYKIEHKKRNVLIYQPRDGQAKTFMKKHVE
EECCCCCCHHHHHHHHHHHCCHHHHHHHCCCEEEEECCCCEEEECCCCCCHHHHHHHHHH
TAIRDIPVWRALAPWMGRKHKDSTLEDKIFTNGKTLMVRGGTAAANYREISTDDVIYDEL
HHHHHCHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCEECCCCHHHHHHH
AGFDESIEHEGNATSLGDTRIELSMFPKSIRGSTPKVLGTCQIEKACSESPHYFRFNLPC
CCCCHHHCCCCCCCCCCCCEEEEEECCHHHCCCCCCEEEEEEEHHHHCCCCCEEEEECCC
PHCDELQDLKWGGPEEAFGIKWHKNAKGEHDPSTAYYLCEHCGCCIENNQLDDMELHPSA
CCCCCHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCEECCCCCCCCEECCCE
VWICENTGIRTKDFLDFYDADGNDITTPPNISIHIWSAYNSLNSWAKLVTEFFKAKGDKE
EEEECCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCHH
KLQTFVNTKLGQPWDNDNGERLEWEELAKRREMYPSGKVPNWVVYLTAGIDTQDNRYEGR
HHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCC
VWGWGAGKEAALIDRFILHGDPADQVLKDKVAERIAQSYARADGVVLNIGVVGWDSGGHY
EEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC
TDDVYAMSKKLGLMRVIPIRGANVYGKPIANFPRKRTAKGVYLTEVGTDNAKELLMSMLR
CHHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCHHHCCCCEEEEECCCCCHHHHHHHHHH
IAPDVDVRKPGAIHFPLNEAVCDDVELQQLTSERKVPVRQNGRIIYKWDNQKRRNEALDC
HCCCCCCCCCCEEECCCCHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHH
FVYALAALYIAIEKFGINLDKLSQVTPIAISSDQPKEPKPKAVKQANANAAYLNGGGGGS
HHHHHHHHHHHHHHHCCCHHHHCCCCCEEECCCCCCCCCCHHHHHCCCCEEEEECCCCCC
SGGWL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]