| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is gdhII [H]
Identifier: 126175668
GI number: 126175668
Start: 4072787
End: 4073551
Strand: Reverse
Name: gdhII [H]
Synonym: Sbal_3471
Alternate gene names: 126175668
Gene position: 4073551-4072787 (Counterclockwise)
Preceding gene: 126175669
Following gene: 126175667
Centisome position: 79.45
GC content: 52.03
Gene sequence:
>765_bases ATGACTATACTTGCCAACAAAGTCGCTATTGTTACCGGTGCCAGTACCGGCATTGGCTACGCAGCCGCGAAGCTTTTTGC GAGAGAAGGTGCTGCCGTAGTGGTTGCAGCAAGGCGACAGAAGGAGCTTGATGACTTGGTGGACTTAATCAATAAGGAAG GCGGGCAGGCACTGGCACTAGCCGGTGATGTTAGCGAAGAAGCTTTTGCCAAAGCATTGGTAGATAAGGCAGTAAGCCAC TTTGGTGGCCTGGATATCGCTTTTAACAATGCTGCCATTTTGGGTGCTATGGGCCCTGTCCCGGAGATGTCGCTCACGGA CTGGAATCAAGTTATTGCGACCAACTTAACCAGCGCATTTTTGGGCGCAAAGTACCAGTTGCCTGCCATGGCTGCCCGAA AAGGAGGTTCGTTAATTTTCACCTCTACCTTCGTTGGTTACACCGCAGGTATGCCAGGCATGGCAGCCTACGCAGCCAGT AAGGCAGGATTGATTGGACTGACTCAAGTGCTGGCATCAGAGCACGGGCCTCAGAATATCCGGGTCAATGCCCTTTTGCC CGGTGGTACTGATACGCCGGCAGGACGTGAGTTTGCCAATACGCCAGAAGCATTGGCATTTGTGCATAATCTGCATGCTC TTAAGCGTATGGCGACACCAGATGAAATTGCCCAATCTGCATTGTACCTTGCCTCCGACGCCTCCAGCTTCACCACGGGA TCTGCAATGCTGGTCGATGGCGGTGTATCTATAAATCGTGTTTGA
Upstream 100 bases:
>100_bases TACAGCAAGATTCGGGTCGGCATTAGTCGTTCGGCCTCCTAATATAGCATCTGTTCGGGCATATGCCCTTTTATAGTAAG CAGATCCTAGAGGAATAACG
Downstream 100 bases:
>100_bases GAGGCCGCCCCATGTCAGACTATGACCGAATCGCAAGCGCTATGGCCTATTTAGTTGATCGGGCAATAGATCAGCCCAGC CTTGAAGAGATAGCCGCCCA
Product: short chain dehydrogenase
Products: NA
Alternate protein names: GLCDH-II [H]
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MTILANKVAIVTGASTGIGYAAAKLFAREGAAVVVAARRQKELDDLVDLINKEGGQALALAGDVSEEAFAKALVDKAVSH FGGLDIAFNNAAILGAMGPVPEMSLTDWNQVIATNLTSAFLGAKYQLPAMAARKGGSLIFTSTFVGYTAGMPGMAAYAAS KAGLIGLTQVLASEHGPQNIRVNALLPGGTDTPAGREFANTPEALAFVHNLHALKRMATPDEIAQSALYLASDASSFTTG SAMLVDGGVSINRV
Sequences:
>Translated_254_residues MTILANKVAIVTGASTGIGYAAAKLFAREGAAVVVAARRQKELDDLVDLINKEGGQALALAGDVSEEAFAKALVDKAVSH FGGLDIAFNNAAILGAMGPVPEMSLTDWNQVIATNLTSAFLGAKYQLPAMAARKGGSLIFTSTFVGYTAGMPGMAAYAAS KAGLIGLTQVLASEHGPQNIRVNALLPGGTDTPAGREFANTPEALAFVHNLHALKRMATPDEIAQSALYLASDASSFTTG SAMLVDGGVSINRV >Mature_253_residues TILANKVAIVTGASTGIGYAAAKLFAREGAAVVVAARRQKELDDLVDLINKEGGQALALAGDVSEEAFAKALVDKAVSHF GGLDIAFNNAAILGAMGPVPEMSLTDWNQVIATNLTSAFLGAKYQLPAMAARKGGSLIFTSTFVGYTAGMPGMAAYAASK AGLIGLTQVLASEHGPQNIRVNALLPGGTDTPAGREFANTPEALAFVHNLHALKRMATPDEIAQSALYLASDASSFTTGS AMLVDGGVSINRV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=34.2857142857143, Blast_Score=144, Evalue=9e-35, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=31.4285714285714, Blast_Score=129, Evalue=4e-30, Organism=Homo sapiens, GI33667109, Length=186, Percent_Identity=34.9462365591398, Blast_Score=115, Evalue=4e-26, Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=35.3174603174603, Blast_Score=114, Evalue=8e-26, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=35.7142857142857, Blast_Score=112, Evalue=5e-25, Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=31.0756972111554, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=32.258064516129, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=33.0708661417323, Blast_Score=105, Evalue=4e-23, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=30.3501945525292, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=31.3008130081301, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI59889578, Length=240, Percent_Identity=29.5833333333333, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=29.5546558704453, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4504505, Length=245, Percent_Identity=31.8367346938775, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=35.7798165137615, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI4503817, Length=189, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=30.5, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI157739938, Length=190, Percent_Identity=25.7894736842105, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI4758504, Length=269, Percent_Identity=26.7657992565056, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=35.0194552529183, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=35.9183673469388, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=36.5853658536585, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=33.1983805668016, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787526, Length=243, Percent_Identity=34.156378600823, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=34.412955465587, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=30.0813008130081, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=29.4354838709677, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=29.7959183673469, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=30, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=32, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=29.8449612403101, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1787820, Length=232, Percent_Identity=27.5862068965517, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787545, Length=258, Percent_Identity=26.3565891472868, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786701, Length=192, Percent_Identity=29.6875, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=36.144578313253, Blast_Score=146, Evalue=1e-35, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=31.1740890688259, Blast_Score=127, Evalue=5e-30, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=34.6613545816733, Blast_Score=117, Evalue=4e-27, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=34.1269841269841, Blast_Score=117, Evalue=7e-27, Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=34.136546184739, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=35.4581673306773, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=30.9963099630996, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=32.2097378277154, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=33.984375, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=29.6992481203008, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=31.6981132075472, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=30.8550185873606, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=29.0566037735849, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17568967, Length=239, Percent_Identity=33.4728033472803, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17559104, Length=269, Percent_Identity=31.2267657992565, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=28.4644194756554, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=28.1124497991968, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=33.203125, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=28.0898876404494, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562906, Length=268, Percent_Identity=30.2238805970149, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=32.03125, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=28.0898876404494, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=26.2357414448669, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=31.2169312169312, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17562990, Length=270, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=27.7566539923954, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=26.5917602996255, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17563726, Length=270, Percent_Identity=25.9259259259259, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17565030, Length=271, Percent_Identity=28.4132841328413, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=34.2307692307692, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI71997099, Length=219, Percent_Identity=30.5936073059361, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17564282, Length=170, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI72000259, Length=269, Percent_Identity=25.6505576208178, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=242, Percent_Identity=30.1652892561983, Blast_Score=88, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6324126, Length=261, Percent_Identity=29.5019157088123, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=29.8969072164948, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6322226, Length=187, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=218, Percent_Identity=28.4403669724771, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=35.2, Blast_Score=144, Evalue=4e-35, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=35.3413654618474, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=34.7826086956522, Blast_Score=121, Evalue=4e-28, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=35.6, Blast_Score=118, Evalue=3e-27, Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=33.201581027668, Blast_Score=117, Evalue=7e-27, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=32, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=32.8063241106719, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=32.2834645669291, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI18859837, Length=190, Percent_Identity=36.3157894736842, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI21358495, Length=193, Percent_Identity=31.0880829015544, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24641232, Length=241, Percent_Identity=29.8755186721992, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI21357673, Length=192, Percent_Identity=30.7291666666667, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI28571387, Length=202, Percent_Identity=30.6930693069307, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=28.9340101522843, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17737361, Length=265, Percent_Identity=26.4150943396226, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI21355631, Length=172, Percent_Identity=29.6511627906977, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24663911, Length=242, Percent_Identity=26.0330578512397, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI281364494, Length=240, Percent_Identity=27.5, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007238, Length=177, Percent_Identity=29.3785310734463, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24641388, Length=204, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007234, Length=238, Percent_Identity=27.7310924369748, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 26037; Mature: 25906
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTILANKVAIVTGASTGIGYAAAKLFAREGAAVVVAARRQKELDDLVDLINKEGGQALAL CEEECCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEE AGDVSEEAFAKALVDKAVSHFGGLDIAFNNAAILGAMGPVPEMSLTDWNQVIATNLTSAF ECCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH LGAKYQLPAMAARKGGSLIFTSTFVGYTAGMPGMAAYAASKAGLIGLTQVLASEHGPQNI HCCCCCCCHHHHCCCCCEEEEEHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCE RVNALLPGGTDTPAGREFANTPEALAFVHNLHALKRMATPDEIAQSALYLASDASSFTTG EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC SAMLVDGGVSINRV CEEEEECCEEECCC >Mature Secondary Structure TILANKVAIVTGASTGIGYAAAKLFAREGAAVVVAARRQKELDDLVDLINKEGGQALAL EEECCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEE AGDVSEEAFAKALVDKAVSHFGGLDIAFNNAAILGAMGPVPEMSLTDWNQVIATNLTSAF ECCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH LGAKYQLPAMAARKGGSLIFTSTFVGYTAGMPGMAAYAASKAGLIGLTQVLASEHGPQNI HCCCCCCCHHHHCCCCCEEEEEHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCE RVNALLPGGTDTPAGREFANTPEALAFVHNLHALKRMATPDEIAQSALYLASDASSFTTG EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC SAMLVDGGVSINRV CEEEEECCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA