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The map label for this gene is secD [H]

Identifier: 126175450

GI number: 126175450

Start: 3810065

End: 3811879

Strand: Reverse

Name: secD [H]

Synonym: Sbal_3250

Alternate gene names: 126175450

Gene position: 3811879-3810065 (Counterclockwise)

Preceding gene: 126175451

Following gene: 126175449

Centisome position: 74.34

GC content: 48.76

Gene sequence:

>1815_bases
ATGGAAAGAAAACCTAATAAACGGCTGCTAAATCACTATTCAGCTTGGAAATATATAGTTCTTATCGTCACCATCATAGT
GATGTTATTCAGTGCCTTGCCTACATTTTATGGTGAGGATGCCGCGGTGCAAGTGGGCGCGAAGGCGGGGTTAACACTTA
CGCCCGTAGCCCTTAGAGATAAGCTGCAAGCTGAAGGCGTGACGGTAAAACGCATCGACCAAAAGAATGGTGAAACCCTG
ATTGTCCTCGATGCGGATAACCAACAAACCTTAGTCAAAACCTTGGTTTCTTCTATGGTGACAGAGCCCAAAGAGTTGAC
TTTATCCCTTGCCAGTGCCGCGCCGAGTTGGTTGCAAAACTTAGGTTTTCAGCCGATTAAACTAGGGCTCGACTTACGTG
GTGGGGTGCAGTTTCTACTCGATGTGGATGTTGACCCTGTGTATCAAACTCAGGGTGAGGCGTTAGTTGATTCGCTACGT
CAATTCATCCGTGAGCAAAAGATCCGTGGTGCCAGCGTCTATTTGGACCAAACTAACCAGTTAAACCTGACGCTGCCCGA
TAATGACGCCCGCGCCGCCGTGCGTCAGATGATGAAACAGTCCTATCCAAATTGGCAATTATCCAATACCGATGGCGCGG
GTTTACAGATTAAGTTGAGTCAAGAGGAACAAACTAAACTGCGTAATTTGACTGTGCAGCAAAACTTGCAAGTTATGCGC
AGTCGTATTGAAGAACTTGGCATCACAGAAGCCTTAGTACAGCGCCAAGGCGATCATCGAATTCGGATTGAGTTGCCTGG
CGTGCAAGATCCTGCAGCCGCGAAAAACGTCATTGGTGCTACAGCGAGTCTGGCTTTTTTCGAGGTGAAAGAGTCAGGCT
CTGTGAATGCCATGGTGCTTAACGATAAGTCGGGTAAGCCTATTTATGTGAGCCGCACGCCTGTGCTGGGTGGCGATCAC
ATTGTCGATGCCAGAGCGAGTTTAGGTGAGATGGGTATGGCCGAGGTAAACATTAACCTCGACCGTATCGGCGGGCAGAA
AATGTCTGAGTTTTCCCGAACCAATATTGGCAAACCTATGGCGACGTCTTACAGCGAATACAGCCGTGATGAACAAGGTA
AGGCTAAGCAAACTCAAGAGATTATCAGCGTCGCGACCATTCAATCCCAGCTTGGAGACCGCTTCCGCATCACTGGCGCT
GGCACCTATCAAGAAGCGCAGCAATTAGCCCTGTTACTGAGAGCGGGCTCTATGACGGCGCCAGTGACGATTGTGGAAGA
GCGTACCATTGGCCCGACGTTAGGCGCTGAAAACATTGAAAACGGTTTTGCTGCGCTTGGTCTAGGTATGGGTATTACCT
TGTTGTTTATGGCGCTTTGGTATCGCCGTCTCGGTTGGGTGGCGAATATCGCGCTGATCTCTAACATGGTGATCTTGTTT
GGCCTACTGGCGCTTATCCCTGGTGCTGTGCTGACCTTACCCGGTATTGCTGGCCTAGTGTTAACCGTGGGTATGGCTGT
CGATACCAACGTGCTGATTTTTGAGCGAATAAAAGACAAGTTAAAAGAAGGTCGCAGTTTTGCGCTGGCAATTGATACGG
GGTTTGATAGTGCGTTTTCGACCATTTTCGACGCTAACTTCACCACTATGATCACGGCTGTCGTGCTGTATTCCATCGGT
AATGGTCCCATTCAAGGTTTCGCCTTGACCTTAGGTCTAGGTCTGTTGACCAGCATGTTTACCGGTATCTTTGCTTCAAG
AGCCTTGATTAACTTAGTTTATGGACGTGATGCTAGTCGTCATGTGAGGGTATAA

Upstream 100 bases:

>100_bases
GCTAGATTTGCTGGTGCTCAATGATAGGTTTCGGACTGATGTCAATATGTTCGCTTAGCTTTTGACTTAAAAGTTAGGTG
ATAAATAGCGAGTTAATCCC

Downstream 100 bases:

>100_bases
CCATGAAAAATATCAATCTAACAAAATGGCGTTATGTTTCCAGTGCTATCTCAATTTTATTGATGATAACGTCATTAGCC
ATCATAGGTGTAAAGGGTTT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MERKPNKRLLNHYSAWKYIVLIVTIIVMLFSALPTFYGEDAAVQVGAKAGLTLTPVALRDKLQAEGVTVKRIDQKNGETL
IVLDADNQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGEALVDSLR
QFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQLSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMR
SRIEELGITEALVQRQGDHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVLNDKSGKPIYVSRTPVLGGDH
IVDARASLGEMGMAEVNINLDRIGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGA
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIG
NGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVRV

Sequences:

>Translated_604_residues
MERKPNKRLLNHYSAWKYIVLIVTIIVMLFSALPTFYGEDAAVQVGAKAGLTLTPVALRDKLQAEGVTVKRIDQKNGETL
IVLDADNQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGEALVDSLR
QFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQLSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMR
SRIEELGITEALVQRQGDHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVLNDKSGKPIYVSRTPVLGGDH
IVDARASLGEMGMAEVNINLDRIGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGA
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIG
NGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVRV
>Mature_604_residues
MERKPNKRLLNHYSAWKYIVLIVTIIVMLFSALPTFYGEDAAVQVGAKAGLTLTPVALRDKLQAEGVTVKRIDQKNGETL
IVLDADNQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGEALVDSLR
QFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQLSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMR
SRIEELGITEALVQRQGDHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVLNDKSGKPIYVSRTPVLGGDH
IVDARASLGEMGMAEVNINLDRIGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGA
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIG
NGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVRV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=606, Percent_Identity=42.7392739273927, Blast_Score=502, Evalue=1e-143,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65762; Mature: 65762

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERKPNKRLLNHYSAWKYIVLIVTIIVMLFSALPTFYGEDAAVQVGAKAGLTLTPVALRD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEECHHHHHH
KLQAEGVTVKRIDQKNGETLIVLDADNQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQN
HHHHCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
LGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGEALVDSLRQFIREQKIRGASVYLDQTNQ
CCCCEEEECEEECCCEEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCE
LNLTLPDNDARAAVRQMMKQSYPNWQLSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMR
EEEEECCCHHHHHHHHHHHHCCCCCEECCCCCCCEEEEECCHHHHHHHHCHHHHHHHHHH
SRIEELGITEALVQRQGDHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVL
HHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCHHHEEEEEEECCCCEEEEEE
NDKSGKPIYVSRTPVLGGDHIVDARASLGEMGMAEVNINLDRIGGQKMSEFSRTNIGKPM
ECCCCCEEEEECCCCCCCCCEECCHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHCCCCCC
ATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTA
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCC
PVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
CEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFS
HHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASR
HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
HVRV
CCCC
>Mature Secondary Structure
MERKPNKRLLNHYSAWKYIVLIVTIIVMLFSALPTFYGEDAAVQVGAKAGLTLTPVALRD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEECHHHHHH
KLQAEGVTVKRIDQKNGETLIVLDADNQQTLVKTLVSSMVTEPKELTLSLASAAPSWLQN
HHHHCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
LGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGEALVDSLRQFIREQKIRGASVYLDQTNQ
CCCCEEEECEEECCCEEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCE
LNLTLPDNDARAAVRQMMKQSYPNWQLSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMR
EEEEECCCHHHHHHHHHHHHCCCCCEECCCCCCCEEEEECCHHHHHHHHCHHHHHHHHHH
SRIEELGITEALVQRQGDHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAMVL
HHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCHHHEEEEEEECCCCEEEEEE
NDKSGKPIYVSRTPVLGGDHIVDARASLGEMGMAEVNINLDRIGGQKMSEFSRTNIGKPM
ECCCCCEEEEECCCCCCCCCEECCHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHCCCCCC
ATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTA
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCC
PVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILF
CEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFS
HHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASR
HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
HVRV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]