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The map label for this gene is yhjC [H]

Identifier: 126175352

GI number: 126175352

Start: 3690232

End: 3691131

Strand: Reverse

Name: yhjC [H]

Synonym: Sbal_3151

Alternate gene names: 126175352

Gene position: 3691131-3690232 (Counterclockwise)

Preceding gene: 126175355

Following gene: 126175348

Centisome position: 71.99

GC content: 47.44

Gene sequence:

>900_bases
ATGAGTGATGATTTAGGCGCTGAACTACAACTTGTCTATCTTTTTGTGCATTTAGTCAATGCGGGCAGTTTTTCACAGGC
GGCGAAGGAGCTTGATATGCCCATTGCCACAGTGAGCCGCAAGTTAGCTAAGTTGGAAGAGAAGCTCGATAAGCAGCTTT
TTATGCGCAGCACCCGCAAGTTACGATTGACGGAGGAAGGGTTGGCACTCTTTCAACGCTACCAGAGTGTGGTTGCCCAA
TTTGATGAACTGAGTGGTGCGGGCAGCGATAAACCCGAGGGCACCCTGCGCATCGCCGCGCCGATTTCGATTATTTCCAT
CGTGTTTATTCAAGCATTGAATGAATTTGGCCGCCTGTATCCCGATATCCGTTTACACATTTCCCAGAGCAATGAGTTAG
TGGATTTGATCGACAAGGGCATAGATGTGGCGATTGTCGGCGGGGCTCAGCCTGATTCTTCTTGGGTGTCGAGTACCTTA
GGCGAGCTGGATTATTGCCTGTTTGCCACGCCAGAATATTTGGCTCAAGCACCTAAACTTGAGCATCCCGATGATCTCGA
AGCCCATCAGCTGATAAAAGTCTGGCCGCTGTTTAATTGGCATTTAAAGCATCCGAGCGGTGAGTCTTTTTATTTTAATG
GCCCAACTAAGTTGACCCTCACGGATTTACACGGTGCGATTCAGGCGACCTTAGGCCATGGCGGGATCTTGTATGGTCCT
GAACTATTTGTAAAACAGCAGATTAAAGAAGGGAAACTTAACGTATTATTACCAGAATGGATTGGCGAGCAGAGGAGGAT
TTCGATTTTATATCATCAGCGCAGCCAGCAGCCGCTAAAGGTAAGAGTCTTTATTGAGTTTATGCAGTCAAAGGCGCCAG
AGTTATTCTCTATGCGTTGA

Upstream 100 bases:

>100_bases
TAATTGATGTTTAAAACACAATGACTTAGCGTACGCTGTGATTGTTGATGACTTTATATAGTGCCTAAAGTGGGCAGCTA
GAACAGAATTAGGACATGCA

Downstream 100 bases:

>100_bases
TTTAACGAGGGGGAACTGATTTTTAACGTCTTTTAGGTTTTACCGTGTTTTTGCTCATGGTATTTTGCGTTTGTTTCGCG
TCCTGCAGGCTGGAGCGTGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSDDLGAELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVVAQ
FDELSGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTL
GELDYCLFATPEYLAQAPKLEHPDDLEAHQLIKVWPLFNWHLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHGGILYGP
ELFVKQQIKEGKLNVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMR

Sequences:

>Translated_299_residues
MSDDLGAELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVVAQ
FDELSGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTL
GELDYCLFATPEYLAQAPKLEHPDDLEAHQLIKVWPLFNWHLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHGGILYGP
ELFVKQQIKEGKLNVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMR
>Mature_298_residues
SDDLGAELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVVAQF
DELSGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLG
ELDYCLFATPEYLAQAPKLEHPDDLEAHQLIKVWPLFNWHLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHGGILYGPE
LFVKQQIKEGKLNVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMR

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=286, Percent_Identity=31.1188811188811, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1789639, Length=283, Percent_Identity=30.3886925795053, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=27.7777777777778, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=28.7625418060201, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=27.9863481228669, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=25.7839721254355, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788706, Length=261, Percent_Identity=28.3524904214559, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=22.7891156462585, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786448, Length=259, Percent_Identity=28.1853281853282, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789173, Length=274, Percent_Identity=23.7226277372263, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693105, Length=155, Percent_Identity=29.6774193548387, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33655; Mature: 33524

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDDLGAELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRK
CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLTEEGLALFQRYQSVVAQFDELSGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLY
EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHC
PDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLGELDYCLFATPEYLAQAPKL
CCEEEEECCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHEECCHHHHHCCCCC
EHPDDLEAHQLIKVWPLFNWHLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHGGILYGP
CCCCCCCHHHHHHHCCCEEEEECCCCCCEEEECCCCEEEEEHHHHHHHHHHCCCCEEECH
ELFVKQQIKEGKLNVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMR
HHHHHHHHHCCCCEEEEHHHCCCCCEEEEEEECCCCCCEEEHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure 
SDDLGAELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRK
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLTEEGLALFQRYQSVVAQFDELSGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLY
EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHC
PDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLGELDYCLFATPEYLAQAPKL
CCEEEEECCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHEECCHHHHHCCCCC
EHPDDLEAHQLIKVWPLFNWHLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHGGILYGP
CCCCCCCHHHHHHHCCCEEEEECCCCCCEEEECCCCEEEEEHHHHHHHHHHCCCCEEECH
ELFVKQQIKEGKLNVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMR
HHHHHHHHHCCCCEEEEHHHCCCCCEEEEEEECCCCCCEEEHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]