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The map label for this gene is cph2 [H]

Identifier: 126175209

GI number: 126175209

Start: 3533315

End: 3535054

Strand: Direct

Name: cph2 [H]

Synonym: Sbal_3007

Alternate gene names: 126175209

Gene position: 3533315-3535054 (Clockwise)

Preceding gene: 126175208

Following gene: 126175210

Centisome position: 68.91

GC content: 44.54

Gene sequence:

>1740_bases
ATGACAAGCACTAAACCGCTGAAAAGCCTAAAACAAAAAATAACCTTAGCCTTCTATATCATAGTGGGCATGGCGCTGTT
TAATGGTGTCGTCGCCATACTGCTGTCACAGCAACTGAAATCAGAAATTGAGCATTTAGTGGGAGTGGATGTTGTTAAAG
TCACCACTGCGCTGCAACTGGCAAAAAACAGTGAAAAACTGCAAATCATCACAGCGCGCTTAAATCATTATGATAATGAA
CAGCAAAGACTTCGCCTATTGAGTGAGCTCTCCGCGCAGTGGGAACTATTAATTAATGACTCCCGATTACTGGCCTTAAT
TGAAACCGCTACTGTCAGTAAGCAAGAATTGAATCACGCGTTAGATATCCAACTTTACTATTTACAACAGCTGCCATTAC
TTGCCGAGTTAACCGATTCCGCCCTACAAGCCAATTTACAAGCAACAAATATTCAAGCCAATTTAACCTCAATGGCATCG
GGATTTACCGATGAAATGCAGACCCAATTTCACAGCATCAATGCCGATTCAGAGCGTCAGCTTAAGCTGAAAAATTTTGA
CAAGATTGCGATGAATATCAATACCAACCAGCAATTGTCTCAATTTAGTCATTTGGGAGAACACTTATTTACCCGCCTAT
CTCAGGTAAAAATTATCGACAATCTGGTTGAGCTTAACCGCACCCAAAGAGAAGCGATGCGACTGCTGTTAAATATGGAG
GCGATTCTCGAGGGCGTTAGCGGGGATACCAGTTTATATTTCAATTTGTTATCGCAAATAAAACAGACCATGGTCGGTGA
AGATAACCTGTTTGAACTGTCCCGCAAGGCCATTAAAAGCACGCATATCGCCAATGCGCATTTAGAGTACCAAGCCGATG
CCGCGCAAATTGTCGCGACTTATACTCAAAATCTGGTCAACCAAGTCGAGAATGAAATCCAACAAACGGGCGGCGAACTT
AAAAGCGACAGCACCGCATTTATCATATTGATTTTCTGCAGTGGTATTCTGTATTGCTTCTTCATCTGGCTCACCAGCTG
GCACTTTATCACTAAGGGCATTATCAAACCTGTGATGGCGACGCGAGATGCCATGAACGCTATCGCCAATGAAAAGCTCG
ACACCCACATGCCAGTCACTGACAACCTAGAACTACAGCAAATGGTGAACTCTTTAGAAACCCTAAAAAGCTATGCGGCC
CAGGTTAAAGGAATGGCGGAAACCGACGGACTAACAGGCTGCTACAACCGCCGTTATTTAGACATACAACTCCAAAAAGA
ACTCGAGTATGCAAGGGATCACAATATGCCTCTTGGCATTATTCTGTTTGATATTGATAACTTTAAACAATTTAACGACA
GATATGGCCATGTCGCCGGCGATCAATGCCTGAAAAACATTGTTAACGCCGCTAAATCCATCTTAAAACGCCCAACTGAC
ATGCTTGCCCGCTATGGCGGTGAGGAATTTATGATAGTGCTGCCATCGAGTCATCTCGAGGAGGTCTATCAATTTGCCGA
ACTATTACGGGAGAAAATCATCAGCCTAGAAATTCCCCATGAAGACTCTCCCCATGCGGGCATACTTACCATCAGCGCGG
GGATTACTTGCTGGCAACTACCGCAACAGCTAGATGCCAATAGTTTAATTAATCGCGCCGATGAAGCCCTCTATCATGCC
AAACTGACGGGGCGTAACCGCACCGAAGCCCTCCTCGGCCAGCCCATTCGCTATTCCTAA

Upstream 100 bases:

>100_bases
AGGCCCGCTGACAGCGAGGATATTTTCATTAAATTAAGTGCAGAGATAAAACACCTCCAAAATACCTATGGAGAGGTACC
TGCTATTGACAAGAAAACCA

Downstream 100 bases:

>100_bases
GGCGCCAATCGCGGCGGCAGAAACGTTTCTTTTTTCAGCAAAGGATTGAGTTAAGTCCTCTTCACCCCCATTAGCTAATA
CTAAGTTAATCAGGATCAGG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 579; Mature: 578

Protein sequence:

>579_residues
MTSTKPLKSLKQKITLAFYIIVGMALFNGVVAILLSQQLKSEIEHLVGVDVVKVTTALQLAKNSEKLQIITARLNHYDNE
QQRLRLLSELSAQWELLINDSRLLALIETATVSKQELNHALDIQLYYLQQLPLLAELTDSALQANLQATNIQANLTSMAS
GFTDEMQTQFHSINADSERQLKLKNFDKIAMNINTNQQLSQFSHLGEHLFTRLSQVKIIDNLVELNRTQREAMRLLLNME
AILEGVSGDTSLYFNLLSQIKQTMVGEDNLFELSRKAIKSTHIANAHLEYQADAAQIVATYTQNLVNQVENEIQQTGGEL
KSDSTAFIILIFCSGILYCFFIWLTSWHFITKGIIKPVMATRDAMNAIANEKLDTHMPVTDNLELQQMVNSLETLKSYAA
QVKGMAETDGLTGCYNRRYLDIQLQKELEYARDHNMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTD
MLARYGGEEFMIVLPSSHLEEVYQFAELLREKIISLEIPHEDSPHAGILTISAGITCWQLPQQLDANSLINRADEALYHA
KLTGRNRTEALLGQPIRYS

Sequences:

>Translated_579_residues
MTSTKPLKSLKQKITLAFYIIVGMALFNGVVAILLSQQLKSEIEHLVGVDVVKVTTALQLAKNSEKLQIITARLNHYDNE
QQRLRLLSELSAQWELLINDSRLLALIETATVSKQELNHALDIQLYYLQQLPLLAELTDSALQANLQATNIQANLTSMAS
GFTDEMQTQFHSINADSERQLKLKNFDKIAMNINTNQQLSQFSHLGEHLFTRLSQVKIIDNLVELNRTQREAMRLLLNME
AILEGVSGDTSLYFNLLSQIKQTMVGEDNLFELSRKAIKSTHIANAHLEYQADAAQIVATYTQNLVNQVENEIQQTGGEL
KSDSTAFIILIFCSGILYCFFIWLTSWHFITKGIIKPVMATRDAMNAIANEKLDTHMPVTDNLELQQMVNSLETLKSYAA
QVKGMAETDGLTGCYNRRYLDIQLQKELEYARDHNMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTD
MLARYGGEEFMIVLPSSHLEEVYQFAELLREKIISLEIPHEDSPHAGILTISAGITCWQLPQQLDANSLINRADEALYHA
KLTGRNRTEALLGQPIRYS
>Mature_578_residues
TSTKPLKSLKQKITLAFYIIVGMALFNGVVAILLSQQLKSEIEHLVGVDVVKVTTALQLAKNSEKLQIITARLNHYDNEQ
QRLRLLSELSAQWELLINDSRLLALIETATVSKQELNHALDIQLYYLQQLPLLAELTDSALQANLQATNIQANLTSMASG
FTDEMQTQFHSINADSERQLKLKNFDKIAMNINTNQQLSQFSHLGEHLFTRLSQVKIIDNLVELNRTQREAMRLLLNMEA
ILEGVSGDTSLYFNLLSQIKQTMVGEDNLFELSRKAIKSTHIANAHLEYQADAAQIVATYTQNLVNQVENEIQQTGGELK
SDSTAFIILIFCSGILYCFFIWLTSWHFITKGIIKPVMATRDAMNAIANEKLDTHMPVTDNLELQQMVNSLETLKSYAAQ
VKGMAETDGLTGCYNRRYLDIQLQKELEYARDHNMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDM
LARYGGEEFMIVLPSSHLEEVYQFAELLREKIISLEIPHEDSPHAGILTISAGITCWQLPQQLDANSLINRADEALYHAK
LTGRNRTEALLGQPIRYS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=40, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=33.1428571428571, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=34.7826086956522, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI87082007, Length=186, Percent_Identity=34.4086021505376, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI87081881, Length=189, Percent_Identity=31.7460317460317, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=36.875, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787802, Length=184, Percent_Identity=33.695652173913, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=31.7647058823529, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788381, Length=191, Percent_Identity=30.3664921465969, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081977, Length=178, Percent_Identity=29.2134831460674, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788085, Length=171, Percent_Identity=29.8245614035088, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 65415; Mature: 65284

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS50885 HAMP ; PS01192 HMG_COA_REDUCTASE_3 ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTKPLKSLKQKITLAFYIIVGMALFNGVVAILLSQQLKSEIEHLVGVDVVKVTTALQL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AKNSEKLQIITARLNHYDNEQQRLRLLSELSAQWELLINDSRLLALIETATVSKQELNHA
HCCCCCEEEEEEHHHCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHCCHHHHCHH
LDIQLYYLQQLPLLAELTDSALQANLQATNIQANLTSMASGFTDEMQTQFHSINADSERQ
HHHEEHHHHHCCHHHHHHHHHHHCCCHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
LKLKNFDKIAMNINTNQQLSQFSHLGEHLFTRLSQVKIIDNLVELNRTQREAMRLLLNME
EECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AILEGVSGDTSLYFNLLSQIKQTMVGEDNLFELSRKAIKSTHIANAHLEYQADAAQIVAT
HHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHH
YTQNLVNQVENEIQQTGGELKSDSTAFIILIFCSGILYCFFIWLTSWHFITKGIIKPVMA
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRDAMNAIANEKLDTHMPVTDNLELQQMVNSLETLKSYAAQVKGMAETDGLTGCYNRRYL
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCEEE
DIQLQKELEYARDHNMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTD
EEEHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHH
MLARYGGEEFMIVLPSSHLEEVYQFAELLREKIISLEIPHEDSPHAGILTISAGITCWQL
HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEECCCCHHHC
PQQLDANSLINRADEALYHAKLTGRNRTEALLGQPIRYS
HHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
TSTKPLKSLKQKITLAFYIIVGMALFNGVVAILLSQQLKSEIEHLVGVDVVKVTTALQL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AKNSEKLQIITARLNHYDNEQQRLRLLSELSAQWELLINDSRLLALIETATVSKQELNHA
HCCCCCEEEEEEHHHCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHCCHHHHCHH
LDIQLYYLQQLPLLAELTDSALQANLQATNIQANLTSMASGFTDEMQTQFHSINADSERQ
HHHEEHHHHHCCHHHHHHHHHHHCCCHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
LKLKNFDKIAMNINTNQQLSQFSHLGEHLFTRLSQVKIIDNLVELNRTQREAMRLLLNME
EECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AILEGVSGDTSLYFNLLSQIKQTMVGEDNLFELSRKAIKSTHIANAHLEYQADAAQIVAT
HHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHH
YTQNLVNQVENEIQQTGGELKSDSTAFIILIFCSGILYCFFIWLTSWHFITKGIIKPVMA
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRDAMNAIANEKLDTHMPVTDNLELQQMVNSLETLKSYAAQVKGMAETDGLTGCYNRRYL
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCEEE
DIQLQKELEYARDHNMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTD
EEEHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHH
MLARYGGEEFMIVLPSSHLEEVYQFAELLREKIISLEIPHEDSPHAGILTISAGITCWQL
HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEECCCCHHHC
PQQLDANSLINRADEALYHAKLTGRNRTEALLGQPIRYS
HHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]