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The map label for this gene is fliA [H]

Identifier: 126175111

GI number: 126175111

Start: 3423302

End: 3424015

Strand: Reverse

Name: fliA [H]

Synonym: Sbal_2909

Alternate gene names: 126175111

Gene position: 3424015-3423302 (Counterclockwise)

Preceding gene: 126175112

Following gene: 126175110

Centisome position: 66.78

GC content: 43.84

Gene sequence:

>714_bases
GTGAATAAAGCCGCTGCGTATACTTGTTTAGACAATAAATCGTCGATCGTTGAACAGTATGCTCCGTTGGTTAAAAGAAT
TGCGCATCATTTACTCGCCAGACTACCTGCCTCCGTGCAGTTAGATGATTTACTCCAAGCTGGGATGATGGGGTTATTAG
AAGCATCATCCAAGTTTGATGGTGGCAAGGGTGCGAAATTTGAAACCTTCGCCGGCATACGCATACGTGGGGCCATGTTA
GATGAAATTCGCCGCGGCGATTGGGTCCCTCGTTCCGTTCATCGTAACAACCGCAAGGTTGCACACGCTATAGATGAGTT
AGAGCAAGCACTGGGTCGTGATGCACGCGACACAGAAATTGCAGAAAAACTTGATATGACGCTCGATGAGTACCATCATA
TTCTTAACGATGTTTCTGTCGGAAAAATCATAGGGATAGAAGACTTAGGCGTATCTCAGGATATACTTACAGTGAGTGAT
CGGTCCGATGATGATTCATTTGAAGCATTAGCTGAGAACCAATTTCATTCTGCTCTGGTTGAGGCAATTAAATTATTGCC
TGAAAGAGATGCATTAGTGTTATCCCTGTACTACGATGAAGCATTGAATTTAAAAGAGATTGGCGCCATTCTTGAAGTCA
GTGAATCGCGGGTTAGCCAGATATTAAGTCAGGCAATGTTGCGATTGAAAGCTAAACTCAAGCACTGGACATAA

Upstream 100 bases:

>100_bases
AAAATTCTAAGCTGGCCTGTACCGCAGCAACCTGGTGGGCATTTGGAGTTTTTCGTTGAGCGTTTAGTACAACGACCAGA
TTTTCAAGAGGAAAAAACGA

Downstream 100 bases:

>100_bases
GTATAATTATTAATCGAGCACAGAATGTCAGCTCACCGGAGGAAACCTTGGACAAGAATATGAAGATTCTCATTGTTGAC
GATTTTTCGACAATGAGGCG

Product: flagellar biosynthesis sigma factor

Products: NA

Alternate protein names: Sigma-28; Sigma-F factor [H]

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNKAAAYTCLDNKSSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAGIRIRGAML
DEIRRGDWVPRSVHRNNRKVAHAIDELEQALGRDARDTEIAEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSQDILTVSD
RSDDDSFEALAENQFHSALVEAIKLLPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKAKLKHWT

Sequences:

>Translated_237_residues
MNKAAAYTCLDNKSSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAGIRIRGAML
DEIRRGDWVPRSVHRNNRKVAHAIDELEQALGRDARDTEIAEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSQDILTVSD
RSDDDSFEALAENQFHSALVEAIKLLPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKAKLKHWT
>Mature_237_residues
MNKAAAYTCLDNKSSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAGIRIRGAML
DEIRRGDWVPRSVHRNNRKVAHAIDELEQALGRDARDTEIAEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSQDILTVSD
RSDDDSFEALAENQFHSALVEAIKLLPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKAKLKHWT

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This alternative sigma factor is specific for the flagellin gene (fliC) expression [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=237, Percent_Identity=48.9451476793249, Blast_Score=213, Evalue=1e-56,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 26402; Mature: 26402

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAAAYTCLDNKSSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFD
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
GGKGAKFETFAGIRIRGAMLDEIRRGDWVPRSVHRNNRKVAHAIDELEQALGRDARDTEI
CCCCCCEEHCCCCEEHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCHHHH
AEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSQDILTVSDRSDDDSFEALAENQFHSALV
HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
EAIKLLPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKAKLKHWT
HHHHHCCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKAAAYTCLDNKSSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFD
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
GGKGAKFETFAGIRIRGAMLDEIRRGDWVPRSVHRNNRKVAHAIDELEQALGRDARDTEI
CCCCCCEEHCCCCEEHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCHHHH
AEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSQDILTVSDRSDDDSFEALAENQFHSALV
HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
EAIKLLPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKAKLKHWT
HHHHHCCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1560774; 10984043 [H]