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The map label for this gene is rfbC [H]

Identifier: 126175090

GI number: 126175090

Start: 3399165

End: 3399728

Strand: Reverse

Name: rfbC [H]

Synonym: Sbal_2887

Alternate gene names: 126175090

Gene position: 3399728-3399165 (Counterclockwise)

Preceding gene: 126175091

Following gene: 126175089

Centisome position: 66.31

GC content: 36.35

Gene sequence:

>564_bases
ATGAATCTCGAGAGAAAAATGAACATCATCGACACCAAGATTCCTGAAGTAAAAATAATTGAGCCGGCTGTTTATGGCGA
TGAGCGAGGTTTCTTTATGGAAACCTGGAATCAACAAAAGTTTGAAGAACTTGTGACTGGTAAATTAACAAGATTTGTTC
AAGATAATCACTCTAAATCTAAGAAAGGAATCTTGCGAGGGTTACATTATCAAACTGAAAATACGCAGGGCAAATTAGTT
CGTGTTGTTTCTGGTGAAGTATTCGATGTAGCTGTTGATATTCGTAAAGACTCACCTAGTTATGGCTATTGGGTTGGTGA
ATATTTATCTGCCGAAAATAAACGTCAGTTATGGGTACCAGAAGGATTTGCTCATGGTTTCTATGTAACAAGCGAAGAAG
CTGAATTTGTTTATAAATGTACTAATTATTATAATCCAAACTCAGAAGTATCGATTTTGTGGAGTGATAAATCTTTAGAT
ATTAAATGGCCAATCCAGTCTTCTCCCGAATTGTCAAAAAAAGACCAACAAGGTGTTCTGCTTCAGCTTGCACCCATGTT
GTGA

Upstream 100 bases:

>100_bases
GCTATTTATGAGAGGTTGTGCTTAGTGTTTGTTGGCAATAGTTCAAAGTTCATAATTAAACCCCAACACTCAGACTTTAA
TAATCCGTAACTTAAGACTT

Downstream 100 bases:

>100_bases
ATTGAATATTAAGTTGGTTTAGTATGAAAAAAAAATTTGCAACTATTTTTAATAATTTTGAAAATGTACATCTTACAAAA
GATGTTGGCATGATACCTTG

Product: dTDP-4-dehydrorhamnose 3,5-epimerase

Products: NA

Alternate protein names: Thymidine diphospho-4-keto-rhamnose 3,5-epimerase; dTDP-4-keto-6-deoxyglucose 3,5-epimerase; dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; dTDP-L-rhamnose synthase [H]

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNLERKMNIIDTKIPEVKIIEPAVYGDERGFFMETWNQQKFEELVTGKLTRFVQDNHSKSKKGILRGLHYQTENTQGKLV
RVVSGEVFDVAVDIRKDSPSYGYWVGEYLSAENKRQLWVPEGFAHGFYVTSEEAEFVYKCTNYYNPNSEVSILWSDKSLD
IKWPIQSSPELSKKDQQGVLLQLAPML

Sequences:

>Translated_187_residues
MNLERKMNIIDTKIPEVKIIEPAVYGDERGFFMETWNQQKFEELVTGKLTRFVQDNHSKSKKGILRGLHYQTENTQGKLV
RVVSGEVFDVAVDIRKDSPSYGYWVGEYLSAENKRQLWVPEGFAHGFYVTSEEAEFVYKCTNYYNPNSEVSILWSDKSLD
IKWPIQSSPELSKKDQQGVLLQLAPML
>Mature_187_residues
MNLERKMNIIDTKIPEVKIIEPAVYGDERGFFMETWNQQKFEELVTGKLTRFVQDNHSKSKKGILRGLHYQTENTQGKLV
RVVSGEVFDVAVDIRKDSPSYGYWVGEYLSAENKRQLWVPEGFAHGFYVTSEEAEFVYKCTNYYNPNSEVSILWSDKSLD
IKWPIQSSPELSKKDQQGVLLQLAPML

Specific function: Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose [H]

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family [H]

Homologues:

Organism=Escherichia coli, GI1788350, Length=172, Percent_Identity=56.9767441860465, Blast_Score=200, Evalue=5e-53,
Organism=Caenorhabditis elegans, GI17550412, Length=167, Percent_Identity=48.502994011976, Blast_Score=156, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: =5.1.3.13 [H]

Molecular weight: Translated: 21649; Mature: 21649

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLERKMNIIDTKIPEVKIIEPAVYGDERGFFMETWNQQKFEELVTGKLTRFVQDNHSKS
CCCCCCCCCHHCCCCCEEEECCEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCC
KKGILRGLHYQTENTQGKLVRVVSGEVFDVAVDIRKDSPSYGYWVGEYLSAENKRQLWVP
HHHHHHHCEECCCCCCCEEEEEECCCEEEEEEEEECCCCCCCEEHHHHHCCCCCCEEECC
EGFAHGFYVTSEEAEFVYKCTNYYNPNSEVSILWSDKSLDIKWPIQSSPELSKKDQQGVL
CCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCEE
LQLAPML
EEEECCC
>Mature Secondary Structure
MNLERKMNIIDTKIPEVKIIEPAVYGDERGFFMETWNQQKFEELVTGKLTRFVQDNHSKS
CCCCCCCCCHHCCCCCEEEECCEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCC
KKGILRGLHYQTENTQGKLVRVVSGEVFDVAVDIRKDSPSYGYWVGEYLSAENKRQLWVP
HHHHHHHCEECCCCCCCEEEEEECCCEEEEEEEEECCCCCCCEEHHHHHCCCCCCEEECC
EGFAHGFYVTSEEAEFVYKCTNYYNPNSEVSILWSDKSLDIKWPIQSSPELSKKDQQGVL
CCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCEE
LQLAPML
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609; 10802738 [H]