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The map label for this gene is agmR [H]

Identifier: 126174706

GI number: 126174706

Start: 2912190

End: 2912852

Strand: Direct

Name: agmR [H]

Synonym: Sbal_2493

Alternate gene names: 126174706

Gene position: 2912190-2912852 (Clockwise)

Preceding gene: 126174705

Following gene: 126174708

Centisome position: 56.8

GC content: 45.1

Gene sequence:

>663_bases
ATGAAGCTAGAAAACTTAAATATTATTATCGCAGACGATCATCCATTGTTCAGAAATGCACTACGTCAAGCACTGACCAC
AGCGTTTGAGCATGCACAATGGTTTGAAGCCGACAGTGCTGACGCACTGCAAGCTGTGTTGGATGTCCGTAGCGTCGATT
ACGATCTTGTACTGTTAGATTTGCAGATGCCCGGTTCCCACGGCTACTCCACACTTATTCATCTACGCTCACATTATCCC
GATTTGCCCGTGGTAGTAATTTCAGCACACGAGGATATCAATACCATTAGCCGTGCGATTCATTATGGTAGCAGTGGTTT
TATTCCTAAATCGGCCTCGATGGAAACCCTCAAAGAGGCACTGAGTGCGGTGTTATTCGGTGATATTTGGTTGCCTAAAG
GCACTGAGATTATTTCTATCGATGACGATGCCGTTGATAAAATGGCGAGCAAATTGTCCGATCTCACGCCGCAGCAGTAT
AAAGTGTTGCAGATGTTTGCCGAAGGTTTGTTAAATAAGCAAATTGCCTATGATCTTGGCGTCTCTGAAGCGACCATAAA
AGCGCACGCGACTGCCATTTTTAGAAAACTGGGCGTTCGTAACCGTACACAAGCCGTCATAGCACTCGCTCAGCTTGAGA
TGGATAAAGTCGATTTATCTTAA

Upstream 100 bases:

>100_bases
AATTTTGTCTTTATTCATGAATAAAGCAATAGGATCCTTGATTACTTTTCTGTTACATTGAGTTCAATCTTCACGCGCAC
CGAACATAATCATAAAAGCC

Downstream 100 bases:

>100_bases
TCGCTTACGTCTTGATATGTATAACGGACTTGATGCATGTTTATGCTTTATTAATGCCACACGGCTAGTGTCTTTATTAC
CTAGATTTAAGCACCTCGAT

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKLENLNIIIADDHPLFRNALRQALTTAFEHAQWFEADSADALQAVLDVRSVDYDLVLLDLQMPGSHGYSTLIHLRSHYP
DLPVVVISAHEDINTISRAIHYGSSGFIPKSASMETLKEALSAVLFGDIWLPKGTEIISIDDDAVDKMASKLSDLTPQQY
KVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALAQLEMDKVDLS

Sequences:

>Translated_220_residues
MKLENLNIIIADDHPLFRNALRQALTTAFEHAQWFEADSADALQAVLDVRSVDYDLVLLDLQMPGSHGYSTLIHLRSHYP
DLPVVVISAHEDINTISRAIHYGSSGFIPKSASMETLKEALSAVLFGDIWLPKGTEIISIDDDAVDKMASKLSDLTPQQY
KVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALAQLEMDKVDLS
>Mature_220_residues
MKLENLNIIIADDHPLFRNALRQALTTAFEHAQWFEADSADALQAVLDVRSVDYDLVLLDLQMPGSHGYSTLIHLRSHYP
DLPVVVISAHEDINTISRAIHYGSSGFIPKSASMETLKEALSAVLFGDIWLPKGTEIISIDDDAVDKMASKLSDLTPQQY
KVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALAQLEMDKVDLS

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=206, Percent_Identity=31.0679611650485, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1788546, Length=211, Percent_Identity=27.0142180094787, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789937, Length=204, Percent_Identity=27.4509803921569, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786747, Length=193, Percent_Identity=26.9430051813472, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1787473, Length=210, Percent_Identity=30, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1790102, Length=198, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788712, Length=197, Percent_Identity=25.8883248730964, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788222, Length=195, Percent_Identity=21.5384615384615, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24329; Mature: 24329

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLENLNIIIADDHPLFRNALRQALTTAFEHAQWFEADSADALQAVLDVRSVDYDLVLLD
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEE
LQMPGSHGYSTLIHLRSHYPDLPVVVISAHEDINTISRAIHYGSSGFIPKSASMETLKEA
EECCCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LSAVLFGDIWLPKGTEIISIDDDAVDKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLG
HHHHHHHCEECCCCCEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
VSEATIKAHATAIFRKLGVRNRTQAVIALAQLEMDKVDLS
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKLENLNIIIADDHPLFRNALRQALTTAFEHAQWFEADSADALQAVLDVRSVDYDLVLLD
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEE
LQMPGSHGYSTLIHLRSHYPDLPVVVISAHEDINTISRAIHYGSSGFIPKSASMETLKEA
EECCCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LSAVLFGDIWLPKGTEIISIDDDAVDKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLG
HHHHHHHCEECCCCCEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
VSEATIKAHATAIFRKLGVRNRTQAVIALAQLEMDKVDLS
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]