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The map label for this gene is ycfD [H]

Identifier: 126174694

GI number: 126174694

Start: 2894979

End: 2896118

Strand: Direct

Name: ycfD [H]

Synonym: Sbal_2481

Alternate gene names: 126174694

Gene position: 2894979-2896118 (Clockwise)

Preceding gene: 126174693

Following gene: 126174696

Centisome position: 56.46

GC content: 47.98

Gene sequence:

>1140_bases
ATGTATACACTCAATCTCGATATCGCCCAGTTTCTTAGTGAATACTGGCAAAAGAAACCCCTGCTGATCAAAAAAGCGTT
TCCGCTGTTTGAAGATCCGATCAGCGCCGATGAACTAGCAGGCCTTGCCTGTGAAGAAGAAATCTCTTCGCGTATCGTCG
TCACTAAAGACGATAACTGGGAAGTGGTTCAAGGCCCGTTTGAAGATTACGACAGCTATGGCGAAACCCATTGGCAGTTA
TTAGTGCAAGCAGTCAATCATTGGTATCCCGATTCGCAGCCATTAGTTGAAGCGCTACGCTTTTTACCTGACTGGCGTTT
CGATGACTTGATGGCCTCATTTGCGACGCCAAGTGGTGGTGTGGGCCCGCACGTCGATAACTACGATGTGTTTATCATTC
AAGGCGAAGGTGAGCGTCGCTGGACTGTGGGTGACAATACCCCGCAACAACGCCGTGGTGGCAATCCCAACTCGCCGCTA
GTAGAAGACTTCACCCCAATTATCGATGTGGTGCTAGAAAAAGGCGACATGCTTTATATTCCACCTGGTTTCCCGCATTG
CGGCGAAACCCTAACAGTGGCAATGAGTTACTCAATTGGTTTTCGTGCACCAAGCCAGCAAGAGCTGATCAGTGAAGTCG
CCGATTACCTGCTCGACAATAACTTAGGTCAGCAGCGTTTCACCTCGCAAACTGAACCCAGTTCAGCGGGTATCGTCAGC
CAAGATCATCAAGTGGGCATAATGTCACTCTTGAGTCAGCTGAGCCAAGATCCCAATAGCTACCAAATCGTGTTAGGTAA
GTTGCTTAGTCAAAACCGTTTCGAGCTTGACTTGTGTGAAGGCGAAGAAGCTTACAGCATTGAAGATTTGCAAGATGCCT
TCGCCCAAGGTGCTGGCATCAGCCGTATCGGCGGTTTGAAAGTACTGCGCCTTGAAAATGACGCCACGCCGCGATTATTC
ATCAATGGTGATGTGCACGAATTGCTAAATACACCGGTAGACGTTATCGCACAGTTGAGCGATAACGTAAGCTTAAGCGC
CGATGAAGCGACTGAAATATGTCAGCATGAAGAAGTTCAAGCCTTACTGTTGAAACTCATCAATCAAGGTTTCTTCTACT
TAAGCGACAGCGAAGAATAA

Upstream 100 bases:

>100_bases
GTTATTAGCCGAAATTGGCGATGGACAATACTCTTTCATAAACAGAAATAAGGATTAAGGCGACTCACATCTCCGCGATG
TGGTCGCCTTTTTTAACACT

Downstream 100 bases:

>100_bases
GATTTATCGACTTTGCTTGATGGCCTTGTTCTTAAAATAGGAAATCAACATAAAAGTCAGTATAAAAAAGGCACTCAATT
GAGTGCCTTATTGTTATTTC

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MYTLNLDIAQFLSEYWQKKPLLIKKAFPLFEDPISADELAGLACEEEISSRIVVTKDDNWEVVQGPFEDYDSYGETHWQL
LVQAVNHWYPDSQPLVEALRFLPDWRFDDLMASFATPSGGVGPHVDNYDVFIIQGEGERRWTVGDNTPQQRRGGNPNSPL
VEDFTPIIDVVLEKGDMLYIPPGFPHCGETLTVAMSYSIGFRAPSQQELISEVADYLLDNNLGQQRFTSQTEPSSAGIVS
QDHQVGIMSLLSQLSQDPNSYQIVLGKLLSQNRFELDLCEGEEAYSIEDLQDAFAQGAGISRIGGLKVLRLENDATPRLF
INGDVHELLNTPVDVIAQLSDNVSLSADEATEICQHEEVQALLLKLINQGFFYLSDSEE

Sequences:

>Translated_379_residues
MYTLNLDIAQFLSEYWQKKPLLIKKAFPLFEDPISADELAGLACEEEISSRIVVTKDDNWEVVQGPFEDYDSYGETHWQL
LVQAVNHWYPDSQPLVEALRFLPDWRFDDLMASFATPSGGVGPHVDNYDVFIIQGEGERRWTVGDNTPQQRRGGNPNSPL
VEDFTPIIDVVLEKGDMLYIPPGFPHCGETLTVAMSYSIGFRAPSQQELISEVADYLLDNNLGQQRFTSQTEPSSAGIVS
QDHQVGIMSLLSQLSQDPNSYQIVLGKLLSQNRFELDLCEGEEAYSIEDLQDAFAQGAGISRIGGLKVLRLENDATPRLF
INGDVHELLNTPVDVIAQLSDNVSLSADEATEICQHEEVQALLLKLINQGFFYLSDSEE
>Mature_379_residues
MYTLNLDIAQFLSEYWQKKPLLIKKAFPLFEDPISADELAGLACEEEISSRIVVTKDDNWEVVQGPFEDYDSYGETHWQL
LVQAVNHWYPDSQPLVEALRFLPDWRFDDLMASFATPSGGVGPHVDNYDVFIIQGEGERRWTVGDNTPQQRRGGNPNSPL
VEDFTPIIDVVLEKGDMLYIPPGFPHCGETLTVAMSYSIGFRAPSQQELISEVADYLLDNNLGQQRFTSQTEPSSAGIVS
QDHQVGIMSLLSQLSQDPNSYQIVLGKLLSQNRFELDLCEGEEAYSIEDLQDAFAQGAGISRIGGLKVLRLENDATPRLF
INGDVHELLNTPVDVIAQLSDNVSLSADEATEICQHEEVQALLLKLINQGFFYLSDSEE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=376, Percent_Identity=43.3510638297872, Blast_Score=317, Evalue=1e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42395; Mature: 42395

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTLNLDIAQFLSEYWQKKPLLIKKAFPLFEDPISADELAGLACEEEISSRIVVTKDDNW
CEEECHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCCHHHHHHHCCEEEEECCCC
EVVQGPFEDYDSYGETHWQLLVQAVNHWYPDSQPLVEALRFLPDWRFDDLMASFATPSGG
CEEECCHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCC
VGPHVDNYDVFIIQGEGERRWTVGDNTPQQRRGGNPNSPLVEDFTPIIDVVLEKGDMLYI
CCCCCCCEEEEEEECCCCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
PPGFPHCGETLTVAMSYSIGFRAPSQQELISEVADYLLDNNLGQQRFTSQTEPSSAGIVS
CCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCC
QDHQVGIMSLLSQLSQDPNSYQIVLGKLLSQNRFELDLCEGEEAYSIEDLQDAFAQGAGI
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCC
SRIGGLKVLRLENDATPRLFINGDVHELLNTPVDVIAQLSDNVSLSADEATEICQHEEVQ
CCCCCEEEEEECCCCCCEEEECCCHHHHHCCHHHHHHHHCCCCEECCHHHHHHHHHHHHH
ALLLKLINQGFFYLSDSEE
HHHHHHHHCCEEEEECCCC
>Mature Secondary Structure
MYTLNLDIAQFLSEYWQKKPLLIKKAFPLFEDPISADELAGLACEEEISSRIVVTKDDNW
CEEECHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCCHHHHHHHCCEEEEECCCC
EVVQGPFEDYDSYGETHWQLLVQAVNHWYPDSQPLVEALRFLPDWRFDDLMASFATPSGG
CEEECCHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCC
VGPHVDNYDVFIIQGEGERRWTVGDNTPQQRRGGNPNSPLVEDFTPIIDVVLEKGDMLYI
CCCCCCCEEEEEEECCCCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
PPGFPHCGETLTVAMSYSIGFRAPSQQELISEVADYLLDNNLGQQRFTSQTEPSSAGIVS
CCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCC
QDHQVGIMSLLSQLSQDPNSYQIVLGKLLSQNRFELDLCEGEEAYSIEDLQDAFAQGAGI
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCC
SRIGGLKVLRLENDATPRLFINGDVHELLNTPVDVIAQLSDNVSLSADEATEICQHEEVQ
CCCCCEEEEEECCCCCCEEEECCCHHHHHCCHHHHHHHHCCCCEECCHHHHHHHHHHHHH
ALLLKLINQGFFYLSDSEE
HHHHHHHHCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]