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The map label for this gene is ykgD [C]

Identifier: 126174543

GI number: 126174543

Start: 2715680

End: 2716600

Strand: Direct

Name: ykgD [C]

Synonym: Sbal_2330

Alternate gene names: 126174543

Gene position: 2715680-2716600 (Clockwise)

Preceding gene: 126174542

Following gene: 126174544

Centisome position: 52.96

GC content: 47.23

Gene sequence:

>921_bases
ATGGTGCTTATCTTGCGGTACACGGCCGACTTATTAGAAATGCGCAGCTTTAAGCGTTTTGAGACGGAACTCGCACACTT
AGGCTTTACGCATTTTAAACCCTTAGCGTCACTTCGCCCTTGGGTGCAGCGCTACTTTCATTTGCGCGTAGCGACTGATT
TACCGCAGAACATTGAGCAGACATTTTATCCGGACGGCGGCACTAGCCTACATTTCTATTTCCCAACACAAACACAAACA
CTAACTCAAACGATAAGCAGCGATGAACCCAAAGTGTTGTTTCATTGTGGTCAAAGCCGACATTCCCACGCCTTTTTGCC
AGGAATCGAGCTGCTGACAGTTCGCTTTCACCCTGGCGGCGCGTTTCATTTACTCGGCATTGAACTGCAAGATATTAAGT
CTACGACATCAGTGACGGCTATTGATGCGACGCAATTGCAGCTAACAGGATTGGATCAACTGCTATCACAACTGGCGCAA
ACCAATCAGCCAGCCCGACGCATCGCATTACTTGAGCATTGGCTATTGCAACTCAACCAGCGGCAATTTGATGCGGCCTT
ATCTCGACATAAAAGCGCTATGATTGGCTTAGTGCAGGCGAGTTTACCAAAGCTTATTCAAACCCAAGCCAGTTTAGAGG
ATTTCTATAGCCAATTGCCCTTAAGTCGTCGTCAGTTTGAACGAAGATTTAAACAAGAAACCGGATTGTCGCCAGCGCAG
TTACTGCAGTTAAACAGAGTCAAAGTCGCCCGCAATCTACTCAGCCAATCACCTAACCTCAGCCTAGTGCAAGTTGCATT
CGATTGCGGATTTTACGATCAAGCCCATCTACATCAACACTTTGTGCGGGTGACACAGCAAACGCCAGGGCAATACAAAA
AGCGTAAAATGTCGCAAATCTCCAATCCTACGTCGCGCTAA

Upstream 100 bases:

>100_bases
CACCACAGACTGTTCAATTCAGCCCAAGGCAAATGCGTACAATCAACACAGGTGCAAAAATGCCTCAGTTAGATTAATCT
GACATTCTTTTCCTTGCCTC

Downstream 100 bases:

>100_bases
CCGCTTAGATTGAAGCCTCAGCTAATAGGAGGCTTTTATGTCAGAACGTATACCACGCCAGCAAATTTATCAGCTACAAC
CCGCACTCGCCAACGCACTG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MVLILRYTADLLEMRSFKRFETELAHLGFTHFKPLASLRPWVQRYFHLRVATDLPQNIEQTFYPDGGTSLHFYFPTQTQT
LTQTISSDEPKVLFHCGQSRHSHAFLPGIELLTVRFHPGGAFHLLGIELQDIKSTTSVTAIDATQLQLTGLDQLLSQLAQ
TNQPARRIALLEHWLLQLNQRQFDAALSRHKSAMIGLVQASLPKLIQTQASLEDFYSQLPLSRRQFERRFKQETGLSPAQ
LLQLNRVKVARNLLSQSPNLSLVQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISNPTSR

Sequences:

>Translated_306_residues
MVLILRYTADLLEMRSFKRFETELAHLGFTHFKPLASLRPWVQRYFHLRVATDLPQNIEQTFYPDGGTSLHFYFPTQTQT
LTQTISSDEPKVLFHCGQSRHSHAFLPGIELLTVRFHPGGAFHLLGIELQDIKSTTSVTAIDATQLQLTGLDQLLSQLAQ
TNQPARRIALLEHWLLQLNQRQFDAALSRHKSAMIGLVQASLPKLIQTQASLEDFYSQLPLSRRQFERRFKQETGLSPAQ
LLQLNRVKVARNLLSQSPNLSLVQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISNPTSR
>Mature_306_residues
MVLILRYTADLLEMRSFKRFETELAHLGFTHFKPLASLRPWVQRYFHLRVATDLPQNIEQTFYPDGGTSLHFYFPTQTQT
LTQTISSDEPKVLFHCGQSRHSHAFLPGIELLTVRFHPGGAFHLLGIELQDIKSTTSVTAIDATQLQLTGLDQLLSQLAQ
TNQPARRIALLEHWLLQLNQRQFDAALSRHKSAMIGLVQASLPKLIQTQASLEDFYSQLPLSRRQFERRFKQETGLSPAQ
LLQLNRVKVARNLLSQSPNLSLVQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISNPTSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35071; Mature: 35071

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLILRYTADLLEMRSFKRFETELAHLGFTHFKPLASLRPWVQRYFHLRVATDLPQNIEQ
CEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TFYPDGGTSLHFYFPTQTQTLTQTISSDEPKVLFHCGQSRHSHAFLPGIELLTVRFHPGG
HCCCCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCCEECCCCEEEEEEECCCC
AFHLLGIELQDIKSTTSVTAIDATQLQLTGLDQLLSQLAQTNQPARRIALLEHWLLQLNQ
EEEEEEEEHHHHCCCCCEEEEECHHEEHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RQFDAALSRHKSAMIGLVQASLPKLIQTQASLEDFYSQLPLSRRQFERRFKQETGLSPAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH
LLQLNRVKVARNLLSQSPNLSLVQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQI
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
SNPTSR
CCCCCC
>Mature Secondary Structure
MVLILRYTADLLEMRSFKRFETELAHLGFTHFKPLASLRPWVQRYFHLRVATDLPQNIEQ
CEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TFYPDGGTSLHFYFPTQTQTLTQTISSDEPKVLFHCGQSRHSHAFLPGIELLTVRFHPGG
HCCCCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCCEECCCCEEEEEEECCCC
AFHLLGIELQDIKSTTSVTAIDATQLQLTGLDQLLSQLAQTNQPARRIALLEHWLLQLNQ
EEEEEEEEHHHHCCCCCEEEEECHHEEHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RQFDAALSRHKSAMIGLVQASLPKLIQTQASLEDFYSQLPLSRRQFERRFKQETGLSPAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH
LLQLNRVKVARNLLSQSPNLSLVQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQI
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
SNPTSR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA