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The map label for this gene is recD [H]

Identifier: 126174496

GI number: 126174496

Start: 2645781

End: 2648000

Strand: Direct

Name: recD [H]

Synonym: Sbal_2280

Alternate gene names: 126174496

Gene position: 2645781-2648000 (Clockwise)

Preceding gene: 126174495

Following gene: 126174498

Centisome position: 51.6

GC content: 50.41

Gene sequence:

>2220_bases
ATGATGCGCTCAACCCAAGGGCTAAATGCACATTCACTCTCAGCCGCGAAATGGATAGACCATGGCGCAATCCAGCTTAC
CGCGCCGCTACCAGAGCTGTTGAAACAGTGGGAGCAAGAACGACTGCTCACGCCACTCGATCGGCATTTCGCACTCGAGA
TGAGTCTCTTACATCCAAGCGACAGCCAACAACCCTTGTTTATTTTGCTATGCGCGCTGTTGAGCCAGCAATTATCTTCA
CAGCACAGCTGCCTAGTGCTCGCCCATATCGTGCCGCTTAATCCTATGGCCGAGCAAAATAGCCATTGTAAAATCAGTTT
AAGTCTCGAAGCGCTAACAGAGACCTTGCAAAGCTTTGATGCCGTTGGCCAAGCTGGCAGTAACAAACCACTTATTTTGG
ATAATGGCAGACTCTATCTACAACGTTATCATCAATTTGAAACCTCAGTGGCCGCTTCTTTAATCCGCCTATCAGGCAGC
GTATCTAAGCACTCTGAAGACGCAAGCCACCAAGAGCATACTCAAACCGCTAAATTGAGGTCACTGTTAGATCAACTGTT
CCCTGCCAATCTGCTCGCGCCCCATTCACTCACTCGCAATGCAATCACTACCAATGTAATCACTAAAAGTGAAGGCACAC
AAAGCGCAGCGACGATTGATTGGCAAAAGGTCGCCACGGCCACAGCGCTGGGTAAAAAATTGTCGGTGATCACTGGCGGC
CCTGGCACAGGTAAAACCACCACTGTGACTAAGCTTTTGTTATTGTTACAAATGGAATCACAACAGGAAATCCGTTTAGT
CGCGCCAACGGGAAAAGCCGCGGCTCGATTAAGCGAGTCAATCAAAGCCTCAAAAGCGCGGCTGGCGAAGGAACTCAGCA
CCCATGCTGATGTTGTTGACGACGCTCGCAATAGAAATAACCAAGACTTTCTAACCGCACTGGGGCGAATTCCAGAGGAG
GCATCAACCTTACACAGGCTGCTCGGGGTGATACCCAATTCGCCGCACTTTCGCCATCATCAAGGTAATCCGCTGCGGCT
CGACTTATTGATCGTCGACGAAGCCTCTATGGTCGATTTGCCCATGATGTATAAATTGCTCAGCGCCTTGCCCGAGCACG
CCAGTTTGATTTTACTCGGCGATCAGGATCAACTCGCCTCGGTTGAGGCTGGCGCTGTGCTCGCCGATATTTGTGCTGGC
CTGAAAATGCCAGTAGCTCCCAATAACCTTGCGCAAAACAACATAGCATCTAACAACCAAGCTCTGTGGCAAATGCGCTA
TTCCAAGGAACAAGCCCTGCGCCTGAGCGCTTTAACGGGTTTTGAGTTAACACCCTATATCAGCGATGCGCCTAAACTTG
GCGATAGCTTGTGTATGCTAATGCACAGTCACAGATTTAAAGGCGATGCAGGGATTGGACTGCTCGCTAGCGCCGTCAAT
CGCGCGGATCTTCAAGGCATATTGCAAGTATGGCAACAGGGACCCGCAGAATTAAGCTGGCTAGAACACAGCATGGTCGT
AAGCCAAACCCAAGCCAAAGTGAGCGAGCCGGTTAATAATGCGGGACTCAATTTACTGCTAGAGCAAGCCTGCCAACAAT
ATGGCGCCTATCTCAGCGCCTTGAATAGCCTTGCAAGTAATAGTGATGTAGGCACACGTCCAAGCACGGCTGACATCATA
GAAAGCTTTAACCAGTACCGCATTTTATGCGCCATGCGCTCGGGCGATTATGGGGTCGAAGGTATCAATCAATTTGTGAC
TCAAGCACTGGCCAATGCCAAGCTGATTAAACCGCTACAGGAGTTTTATCTGGGTCGGCCCATTATCATCCAAAGCAATG
ACTATAACTTAGGCCTGTTTAACGGTGATATTGGGCTGATTTTGCAGGATGAAGATAAACCCGAACGTTTAATGGCGCAC
TTCATCAAGGCCGATGGCAGCCTGTTAAAAGTCTTGCCAGCACGTTTGCCCAGCCATGAAACCTGTTACGCCATGACGGT
ACACAAAAGCCAAGGCAGCGAATTTAGCCGTGTGGCCTTAGTGCTGCCACCGAGCCCCAGCTTAGCGCAGTGGCAACTGC
TGACCAAAGAGTTGGTCTATACCGCCATCACCCGCGCTAAAGTGCATTTTACCTGCTTAGGCACCCAGCACGTATTCGAG
CGGGCCAGCAGTCAAGCAACCCAACGCGCATCGGGTCTTGCTGACAGGCTTTGGGGTTAA

Upstream 100 bases:

>100_bases
ACAAGCCGCCGAAAGCACTTATTCTCGCGCTGGATTTACTTTTTAATGACAATTTATTTCACAGCAGATTAGCTGGTGCA
ATCGATACAGGAGTCACGGC

Downstream 100 bases:

>100_bases
GTTAACGGTTAGTAATATTGAATTGAACTGAACTTTCTCATGAGCTTTTTTATGGGCTTTTTCTTATGAACGTTAGTGCT
GAACTTAACAATGCGCTATG

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 739; Mature: 739

Protein sequence:

>739_residues
MMRSTQGLNAHSLSAAKWIDHGAIQLTAPLPELLKQWEQERLLTPLDRHFALEMSLLHPSDSQQPLFILLCALLSQQLSS
QHSCLVLAHIVPLNPMAEQNSHCKISLSLEALTETLQSFDAVGQAGSNKPLILDNGRLYLQRYHQFETSVAASLIRLSGS
VSKHSEDASHQEHTQTAKLRSLLDQLFPANLLAPHSLTRNAITTNVITKSEGTQSAATIDWQKVATATALGKKLSVITGG
PGTGKTTTVTKLLLLLQMESQQEIRLVAPTGKAAARLSESIKASKARLAKELSTHADVVDDARNRNNQDFLTALGRIPEE
ASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHASLILLGDQDQLASVEAGAVLADICAG
LKMPVAPNNLAQNNIASNNQALWQMRYSKEQALRLSALTGFELTPYISDAPKLGDSLCMLMHSHRFKGDAGIGLLASAVN
RADLQGILQVWQQGPAELSWLEHSMVVSQTQAKVSEPVNNAGLNLLLEQACQQYGAYLSALNSLASNSDVGTRPSTADII
ESFNQYRILCAMRSGDYGVEGINQFVTQALANAKLIKPLQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDKPERLMAH
FIKADGSLLKVLPARLPSHETCYAMTVHKSQGSEFSRVALVLPPSPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVFE
RASSQATQRASGLADRLWG

Sequences:

>Translated_739_residues
MMRSTQGLNAHSLSAAKWIDHGAIQLTAPLPELLKQWEQERLLTPLDRHFALEMSLLHPSDSQQPLFILLCALLSQQLSS
QHSCLVLAHIVPLNPMAEQNSHCKISLSLEALTETLQSFDAVGQAGSNKPLILDNGRLYLQRYHQFETSVAASLIRLSGS
VSKHSEDASHQEHTQTAKLRSLLDQLFPANLLAPHSLTRNAITTNVITKSEGTQSAATIDWQKVATATALGKKLSVITGG
PGTGKTTTVTKLLLLLQMESQQEIRLVAPTGKAAARLSESIKASKARLAKELSTHADVVDDARNRNNQDFLTALGRIPEE
ASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHASLILLGDQDQLASVEAGAVLADICAG
LKMPVAPNNLAQNNIASNNQALWQMRYSKEQALRLSALTGFELTPYISDAPKLGDSLCMLMHSHRFKGDAGIGLLASAVN
RADLQGILQVWQQGPAELSWLEHSMVVSQTQAKVSEPVNNAGLNLLLEQACQQYGAYLSALNSLASNSDVGTRPSTADII
ESFNQYRILCAMRSGDYGVEGINQFVTQALANAKLIKPLQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDKPERLMAH
FIKADGSLLKVLPARLPSHETCYAMTVHKSQGSEFSRVALVLPPSPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVFE
RASSQATQRASGLADRLWG
>Mature_739_residues
MMRSTQGLNAHSLSAAKWIDHGAIQLTAPLPELLKQWEQERLLTPLDRHFALEMSLLHPSDSQQPLFILLCALLSQQLSS
QHSCLVLAHIVPLNPMAEQNSHCKISLSLEALTETLQSFDAVGQAGSNKPLILDNGRLYLQRYHQFETSVAASLIRLSGS
VSKHSEDASHQEHTQTAKLRSLLDQLFPANLLAPHSLTRNAITTNVITKSEGTQSAATIDWQKVATATALGKKLSVITGG
PGTGKTTTVTKLLLLLQMESQQEIRLVAPTGKAAARLSESIKASKARLAKELSTHADVVDDARNRNNQDFLTALGRIPEE
ASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHASLILLGDQDQLASVEAGAVLADICAG
LKMPVAPNNLAQNNIASNNQALWQMRYSKEQALRLSALTGFELTPYISDAPKLGDSLCMLMHSHRFKGDAGIGLLASAVN
RADLQGILQVWQQGPAELSWLEHSMVVSQTQAKVSEPVNNAGLNLLLEQACQQYGAYLSALNSLASNSDVGTRPSTADII
ESFNQYRILCAMRSGDYGVEGINQFVTQALANAKLIKPLQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDKPERLMAH
FIKADGSLLKVLPARLPSHETCYAMTVHKSQGSEFSRVALVLPPSPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVFE
RASSQATQRASGLADRLWG

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=703, Percent_Identity=38.5490753911807, Blast_Score=379, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 80698; Mature: 80698

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRSTQGLNAHSLSAAKWIDHGAIQLTAPLPELLKQWEQERLLTPLDRHFALEMSLLHPS
CCCCCCCCCCCCCHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHEEEEEEECCC
DSQQPLFILLCALLSQQLSSQHSCLVLAHIVPLNPMAEQNSHCKISLSLEALTETLQSFD
CCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHH
AVGQAGSNKPLILDNGRLYLQRYHQFETSVAASLIRLSGSVSKHSEDASHQEHTQTAKLR
HHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
SLLDQLFPANLLAPHSLTRNAITTNVITKSEGTQSAATIDWQKVATATALGKKLSVITGG
HHHHHHCCCCCCCCCHHHCCHHEEEEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEEECC
PGTGKTTTVTKLLLLLQMESQQEIRLVAPTGKAAARLSESIKASKARLAKELSTHADVVD
CCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DARNRNNQDFLTALGRIPEEASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVDL
HHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCH
PMMYKLLSALPEHASLILLGDQDQLASVEAGAVLADICAGLKMPVAPNNLAQNNIASNNQ
HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCH
ALWQMRYSKEQALRLSALTGFELTPYISDAPKLGDSLCMLMHSHRFKGDAGIGLLASAVN
HHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RADLQGILQVWQQGPAELSWLEHSMVVSQTQAKVSEPVNNAGLNLLLEQACQQYGAYLSA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LNSLASNSDVGTRPSTADIIESFNQYRILCAMRSGDYGVEGINQFVTQALANAKLIKPLQ
HHHHHCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
EFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDKPERLMAHFIKADGSLLKVLPARLPSHE
HHHCCCCEEEECCCCEEEEEECCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCC
TCYAMTVHKSQGSEFSRVALVLPPSPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVFE
CEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHHH
RASSQATQRASGLADRLWG
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMRSTQGLNAHSLSAAKWIDHGAIQLTAPLPELLKQWEQERLLTPLDRHFALEMSLLHPS
CCCCCCCCCCCCCHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHEEEEEEECCC
DSQQPLFILLCALLSQQLSSQHSCLVLAHIVPLNPMAEQNSHCKISLSLEALTETLQSFD
CCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHH
AVGQAGSNKPLILDNGRLYLQRYHQFETSVAASLIRLSGSVSKHSEDASHQEHTQTAKLR
HHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
SLLDQLFPANLLAPHSLTRNAITTNVITKSEGTQSAATIDWQKVATATALGKKLSVITGG
HHHHHHCCCCCCCCCHHHCCHHEEEEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEEECC
PGTGKTTTVTKLLLLLQMESQQEIRLVAPTGKAAARLSESIKASKARLAKELSTHADVVD
CCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DARNRNNQDFLTALGRIPEEASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVDL
HHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCH
PMMYKLLSALPEHASLILLGDQDQLASVEAGAVLADICAGLKMPVAPNNLAQNNIASNNQ
HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCH
ALWQMRYSKEQALRLSALTGFELTPYISDAPKLGDSLCMLMHSHRFKGDAGIGLLASAVN
HHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RADLQGILQVWQQGPAELSWLEHSMVVSQTQAKVSEPVNNAGLNLLLEQACQQYGAYLSA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LNSLASNSDVGTRPSTADIIESFNQYRILCAMRSGDYGVEGINQFVTQALANAKLIKPLQ
HHHHHCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
EFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDKPERLMAHFIKADGSLLKVLPARLPSHE
HHHCCCCEEEECCCCEEEEEECCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCC
TCYAMTVHKSQGSEFSRVALVLPPSPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVFE
CEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHHH
RASSQATQRASGLADRLWG
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]