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The map label for this gene is rnfD [H]

Identifier: 126174478

GI number: 126174478

Start: 2620656

End: 2621705

Strand: Direct

Name: rnfD [H]

Synonym: Sbal_2262

Alternate gene names: 126174478

Gene position: 2620656-2621705 (Clockwise)

Preceding gene: 126174477

Following gene: 126174479

Centisome position: 51.11

GC content: 51.52

Gene sequence:

>1050_bases
ATGGCGTTTAAAATAGCCTCATCACCCCATGTAACGCGTAACTTGCATACCTCAACGGTCATGCAAAGGGTGATTTTATG
TTTACTGCCGGGCCTTGTCGTGCAATGTGCCTTTTTTGGCTGGGGCACACTTGTGCAAGTCCTGCTGGCGATCCTCGTCG
CCTTAAGCTGCGAAGCCGCTGTGATGAAACTTCGCAATCGCAATATCAAAGCGAGCCTTAGCGATAACAGCGCCATGCTC
ACCGCCATCTTAATTGGTGTCGCCATTCCGCCCCTCGCCCCTTGGTGGATGATCGTCATGGGCACCGCCTTTGCGATCGT
CATAGTTAAGCACCTCTACGGCGGCTTAGGCCATAACCTATTCAACCCAGCAATGGCGGCATATGTATTGCTGTTAGTCT
CGTTCCCTGTGCAAATGACCTCCTGGATAGCACCGAGCACCGTTGCACTGCATTCACCCTGCCTTGTTGAAAGCTTGCAA
CTTATCTTCAATGTTGGCGCGCACGTGAATATGGAGCAGTTCCGTTTAGGCATTGATGGCATGACAATGGCGACGCCACT
CGATACCCTCAAAACCGATTTATCCATGGGATTAACCACCACAGAAAGTCTCACCAAAGCCATTTTTGATGGCAGTACAG
GCGTAGGTTGGTTCTGGGTGAACTTGGCCTATCTTGCTGGCGGGTTAGTGTTACTTAAACTAAAAGCCATTCGCTGGCAC
ATCAGCACTGGCGTGTTATTAGGGCTCTTTGTGGCATCGAGTATCGGTTTCTTACTGTCACCCGATACCCAAGCCAGTCC
ACTGATGCATCTGTTTTCTGGCGCGACCATGTTAGCGGCGTTTTTTATCGCCACTGATCCCGTTACAGCCGCAACCAGCC
CCCGTGGCCGTATTATCTTCGGCGCGTTAATTGGTGTGTTGGTGTATATCATCCGCACGAAAGGCGGTTACCCTGACGCC
TTCGCCTTTGCCGTGTTACTGGCCAACCTCTGTGCGCCCTTTATTGACTATTACGTGCGTCCACGCACCTATGGCCATTC
AACGAGCTAA

Upstream 100 bases:

>100_bases
AGGCAAAAGCCAAAAAAGCGGCACTAGCCAAAGAAGCCAATGCTTCGAGCGACTCAAGTGTAACTAATGATTAAGAACAG
AATGATTAAAAGGGAACACA

Downstream 100 bases:

>100_bases
GGTCATGCTAAGCGATAACATCATTCTGCGGGCAACGAGAGCTTAAGGATAAAAAGTTGAAAAATCCGATGATTAAAAAT
GGTTTTTTATTGGCATTGTT

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MAFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLVQVLLAILVALSCEAAVMKLRNRNIKASLSDNSAML
TAILIGVAIPPLAPWWMIVMGTAFAIVIVKHLYGGLGHNLFNPAMAAYVLLLVSFPVQMTSWIAPSTVALHSPCLVESLQ
LIFNVGAHVNMEQFRLGIDGMTMATPLDTLKTDLSMGLTTTESLTKAIFDGSTGVGWFWVNLAYLAGGLVLLKLKAIRWH
ISTGVLLGLFVASSIGFLLSPDTQASPLMHLFSGATMLAAFFIATDPVTAATSPRGRIIFGALIGVLVYIIRTKGGYPDA
FAFAVLLANLCAPFIDYYVRPRTYGHSTS

Sequences:

>Translated_349_residues
MAFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLVQVLLAILVALSCEAAVMKLRNRNIKASLSDNSAML
TAILIGVAIPPLAPWWMIVMGTAFAIVIVKHLYGGLGHNLFNPAMAAYVLLLVSFPVQMTSWIAPSTVALHSPCLVESLQ
LIFNVGAHVNMEQFRLGIDGMTMATPLDTLKTDLSMGLTTTESLTKAIFDGSTGVGWFWVNLAYLAGGLVLLKLKAIRWH
ISTGVLLGLFVASSIGFLLSPDTQASPLMHLFSGATMLAAFFIATDPVTAATSPRGRIIFGALIGVLVYIIRTKGGYPDA
FAFAVLLANLCAPFIDYYVRPRTYGHSTS
>Mature_348_residues
AFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLVQVLLAILVALSCEAAVMKLRNRNIKASLSDNSAMLT
AILIGVAIPPLAPWWMIVMGTAFAIVIVKHLYGGLGHNLFNPAMAAYVLLLVSFPVQMTSWIAPSTVALHSPCLVESLQL
IFNVGAHVNMEQFRLGIDGMTMATPLDTLKTDLSMGLTTTESLTKAIFDGSTGVGWFWVNLAYLAGGLVLLKLKAIRWHI
STGVLLGLFVASSIGFLLSPDTQASPLMHLFSGATMLAAFFIATDPVTAATSPRGRIIFGALIGVLVYIIRTKGGYPDAF
AFAVLLANLCAPFIDYYVRPRTYGHSTS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=349, Percent_Identity=56.1604584527221, Blast_Score=399, Evalue=1e-112,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 37502; Mature: 37371

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLVQVLLAILVALSCEAA
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
VMKLRNRNIKASLSDNSAMLTAILIGVAIPPLAPWWMIVMGTAFAIVIVKHLYGGLGHNL
HHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAAYVLLLVSFPVQMTSWIAPSTVALHSPCLVESLQLIFNVGAHVNMEQFRLGIDG
HHHHHHHHHHHHHHCCHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHCCCCC
MTMATPLDTLKTDLSMGLTTTESLTKAIFDGSTGVGWFWVNLAYLAGGLVLLKLKAIRWH
CCHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ISTGVLLGLFVASSIGFLLSPDTQASPLMHLFSGATMLAAFFIATDPVTAATSPRGRIIF
HHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
GALIGVLVYIIRTKGGYPDAFAFAVLLANLCAPFIDYYVRPRTYGHSTS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLVQVLLAILVALSCEAA
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
VMKLRNRNIKASLSDNSAMLTAILIGVAIPPLAPWWMIVMGTAFAIVIVKHLYGGLGHNL
HHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAAYVLLLVSFPVQMTSWIAPSTVALHSPCLVESLQLIFNVGAHVNMEQFRLGIDG
HHHHHHHHHHHHHHCCHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHCCCCC
MTMATPLDTLKTDLSMGLTTTESLTKAIFDGSTGVGWFWVNLAYLAGGLVLLKLKAIRWH
CCHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ISTGVLLGLFVASSIGFLLSPDTQASPLMHLFSGATMLAAFFIATDPVTAATSPRGRIIF
HHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
GALIGVLVYIIRTKGGYPDAFAFAVLLANLCAPFIDYYVRPRTYGHSTS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA