| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is rnfC [H]
Identifier: 126174477
GI number: 126174477
Start: 2617975
End: 2620629
Strand: Direct
Name: rnfC [H]
Synonym: Sbal_2261
Alternate gene names: 126174477
Gene position: 2617975-2620629 (Clockwise)
Preceding gene: 126174476
Following gene: 126174478
Centisome position: 51.06
GC content: 50.55
Gene sequence:
>2655_bases GTGTTAACTTTATTAGATCAATTAGATAAAGGAACCCTTTGGCGCTCACCCGGTGGAATACATCCTCCTGAAGTCAAATT CCTCTCCAACGCGACGCCGATTGGCCAACTGCCATTAGCCTCGATGTACTTAGTGCCCGTGCCTCAAGTCGGTGAAAACT GTACGCTTGCGGTGAAGGTTGGCGATAGCGTCTTAAAAGGCATGCCACTAACGCAAGGTACCTCGATTTGGCATTTACCT GTGCATGCGCCAACATCGGGCACTATTGTTGCTATCGAACCAAGGGCGAGCAACCATGCCTCTGCATTGCCGGTTAACAC TTGCGTTATCGCAGCCGATGGCAAAGACACCTGGTGCGAGTTGGTGCAAAATCAACTTGATGACTTAAGCCATCAGCAAA TCGTTGATAAGGTTCGCTCAGCCGGTATTGCAGGTATGGGCGGCGCAGCGTTTCCGACTCACATCAAGCTTAATCCCGTC AGTGAAATCGATTTAGTCATCATCAACGGCGTCGAGTGCGAACCTTATATCAGCGCCGATGACAGATTAATGCGTGAATA CAGCCAAGATATCCTCGCAGGTATTGGCATAATTCATCGGCTATTAACGCCAAAACGCATTGTTATCGCCATTGAAGACA ATAAACCTGAAGCGGCTAAAGCCATGCAAACAGCTGTCAGCCAATGCGGACTCCCAGCGGGCAGCATTCGGGTAACGGTT ATCCCGACCAAATACCCATCTGGCGGTGAAAAGCAGTTAATTCAAATCATTACTGGCCGCGAAGTGCCCTCGGGCGCCAT TCCCGCCAAACTCGGTATCGTGGTACATAACGTCGGCACTGCCTATGCGATTCATCAAGCCGTCACCCAAGGCAAGCCTT TGGTTGAACGCGTTGTGACTGTAACAGGCAAAAATGTCAGCAAACCGGGGAACTACTGGTTACCGATAGGTACGCCCGTT GATCACGTACTGACTGCAACTGAATTCACGCCAGAGCCTGACCAAAAGGTGATTATTGGCGGGCCTATGATGGGCCATGC TTTAGCGAATATCCAAGTGCCTATTTTAAAAGGTACAAACTGCATTCTGGTGCCAAGCAGCCAAGAAATTGGTAACACGC CAGAAGAAAAAGCCTGTATCCGCTGCGGCGAATGCGCCACTGCCTGCCCTGCACTCTTGTTGCCACAACAACTCTTTTGG CACGCCAAGGCCGAAGAGTACGACAAAGCCGCCAGTTACAATCTAAAGGATTGTATTGAATGCGGTTGTTGTAGTTACGT TTGCCCGAGTGATATTCCTTTAGTCGAGTATTACCGCATTGCCAAATCTGCACTCAAACAAGCCGCCGATGAGAAGCAGC AAGCAGAGCGCGCCAAACAGCGCTTCGATGCCCGCTTAGCGCGTCTTGAAGAAGAAAAACTGGCCCGTGAAGCTAAGGCG AAAGAGGCATCTGAACGTCGACAAGCCAGCATGACAGGCACAGATAAAAATGCCGTCGCCGAAGCCATGGCCCGTATCGC TGCGAAAAAAGCTGCTGCGGCACAAGCTGTCACTGGCGAATCAATTACCGAAGAGTCAAGCGTCACAACAACTGACACCA CGGAAGTACCAAAAGGTAAGGCCGCCGTTGCCGCCGCCATCGCCCGTGCTAAGGCGAAAAAAGCTGCCCAAGCAAATGCC GATGGCACAGACACCAATGGTGCTGAAACAGACCGTGCCAAAACAGACAATGCGGTGAATGTTGATGCAAACGACTCCAT CTCAGCAACAGATGCGATAGCGCAGGAAGCGCCTTTATCCCAAAAAGACAAAGTCGCTGCGGCGATTGCGCGCGCCAAGG CCAAAAAAGCCGCACAGCAAACCGATACCGCACCGCTTGAGCCTACTGAAACCGCTGACAGCACATCAGAGCTCAGCGCT GCCGATGATAAAAAGGCGAAAGTAGCAGCAGCCGTTGCTCGTGCCAAGGCCAAGGCCAAGAAAGCGGCGCAGCAAGCAGA AACCGCCGCTAGTGATATTGAAGTTAGCAATACTGAAGTTAGCGTTAGTGACATTAATGATGCTGAAGCGATTAAGAAAG CCAAAGTAGCCGCCGCAGTTGCTCGCGCAAAAGCGAAAAAAGCCGCTCAACAAGCTGAAACAAATGCTGAAAATGTTTTA AACCAGACCACAACTCCAGCAGTTGATTCCGCAGCTAACGTTCATGCAGATGTGAATGCTGATGCAGAAACCGCTGTTAA TGCAGCCGCTACTGATATTGAAGTTAGCAACGCTGACGTTAGCGTTAACGACGCTGAAGCGATTAAAAAGGCCAAAGTGG CCGCCGCTGTTGCTCGTGCTAAAGCTAAGAAAATAGCAGCTGCATCAGCGGAGTCTAAAACTGAGTCTGAAATAGAGTCC GTTGACGAGATCCAAACTGAAGCTAACGTCGCATCGCCCTCGATAGCAGCAGAACTTGAGACAGTAACAACTGAACCCGA AGCCGTTTTGCCATCGGTGGGATCCACTGCAGAGCCCATTGAAACGGCGCCTTTATCGAGTGATGAACTTAAGAAAGCGC GGATTGCTGCGACCATCGCCAAGGCAAAAGCCAAAAAAGCGGCACTAGCCAAAGAAGCCAATGCTTCGAGCGACTCAAGT GTAACTAATGATTAA
Upstream 100 bases:
>100_bases CCCCAAATCTTAAAAATTGGAACTGGCGCTTAAATGCTATCCCAGTGACGCTCATACAAGAAAACAGTATTCAAGAGACA AAGTCTGAAGAGGAAAAGCG
Downstream 100 bases:
>100_bases GAACAGAATGATTAAAAGGGAACACAATGGCGTTTAAAATAGCCTCATCACCCCATGTAACGCGTAACTTGCATACCTCA ACGGTCATGCAAAGGGTGAT
Product: electron transport complex protein RnfC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 884; Mature: 884
Protein sequence:
>884_residues MLTLLDQLDKGTLWRSPGGIHPPEVKFLSNATPIGQLPLASMYLVPVPQVGENCTLAVKVGDSVLKGMPLTQGTSIWHLP VHAPTSGTIVAIEPRASNHASALPVNTCVIAADGKDTWCELVQNQLDDLSHQQIVDKVRSAGIAGMGGAAFPTHIKLNPV SEIDLVIINGVECEPYISADDRLMREYSQDILAGIGIIHRLLTPKRIVIAIEDNKPEAAKAMQTAVSQCGLPAGSIRVTV IPTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAYAIHQAVTQGKPLVERVVTVTGKNVSKPGNYWLPIGTPV DHVLTATEFTPEPDQKVIIGGPMMGHALANIQVPILKGTNCILVPSSQEIGNTPEEKACIRCGECATACPALLLPQQLFW HAKAEEYDKAASYNLKDCIECGCCSYVCPSDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLARLEEEKLAREAKA KEASERRQASMTGTDKNAVAEAMARIAAKKAAAAQAVTGESITEESSVTTTDTTEVPKGKAAVAAAIARAKAKKAAQANA DGTDTNGAETDRAKTDNAVNVDANDSISATDAIAQEAPLSQKDKVAAAIARAKAKKAAQQTDTAPLEPTETADSTSELSA ADDKKAKVAAAVARAKAKAKKAAQQAETAASDIEVSNTEVSVSDINDAEAIKKAKVAAAVARAKAKKAAQQAETNAENVL NQTTTPAVDSAANVHADVNADAETAVNAAATDIEVSNADVSVNDAEAIKKAKVAAAVARAKAKKIAAASAESKTESEIES VDEIQTEANVASPSIAAELETVTTEPEAVLPSVGSTAEPIETAPLSSDELKKARIAATIAKAKAKKAALAKEANASSDSS VTND
Sequences:
>Translated_884_residues MLTLLDQLDKGTLWRSPGGIHPPEVKFLSNATPIGQLPLASMYLVPVPQVGENCTLAVKVGDSVLKGMPLTQGTSIWHLP VHAPTSGTIVAIEPRASNHASALPVNTCVIAADGKDTWCELVQNQLDDLSHQQIVDKVRSAGIAGMGGAAFPTHIKLNPV SEIDLVIINGVECEPYISADDRLMREYSQDILAGIGIIHRLLTPKRIVIAIEDNKPEAAKAMQTAVSQCGLPAGSIRVTV IPTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAYAIHQAVTQGKPLVERVVTVTGKNVSKPGNYWLPIGTPV DHVLTATEFTPEPDQKVIIGGPMMGHALANIQVPILKGTNCILVPSSQEIGNTPEEKACIRCGECATACPALLLPQQLFW HAKAEEYDKAASYNLKDCIECGCCSYVCPSDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLARLEEEKLAREAKA KEASERRQASMTGTDKNAVAEAMARIAAKKAAAAQAVTGESITEESSVTTTDTTEVPKGKAAVAAAIARAKAKKAAQANA DGTDTNGAETDRAKTDNAVNVDANDSISATDAIAQEAPLSQKDKVAAAIARAKAKKAAQQTDTAPLEPTETADSTSELSA ADDKKAKVAAAVARAKAKAKKAAQQAETAASDIEVSNTEVSVSDINDAEAIKKAKVAAAVARAKAKKAAQQAETNAENVL NQTTTPAVDSAANVHADVNADAETAVNAAATDIEVSNADVSVNDAEAIKKAKVAAAVARAKAKKIAAASAESKTESEIES VDEIQTEANVASPSIAAELETVTTEPEAVLPSVGSTAEPIETAPLSSDELKKARIAATIAKAKAKKAALAKEANASSDSS VTND >Mature_884_residues MLTLLDQLDKGTLWRSPGGIHPPEVKFLSNATPIGQLPLASMYLVPVPQVGENCTLAVKVGDSVLKGMPLTQGTSIWHLP VHAPTSGTIVAIEPRASNHASALPVNTCVIAADGKDTWCELVQNQLDDLSHQQIVDKVRSAGIAGMGGAAFPTHIKLNPV SEIDLVIINGVECEPYISADDRLMREYSQDILAGIGIIHRLLTPKRIVIAIEDNKPEAAKAMQTAVSQCGLPAGSIRVTV IPTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAYAIHQAVTQGKPLVERVVTVTGKNVSKPGNYWLPIGTPV DHVLTATEFTPEPDQKVIIGGPMMGHALANIQVPILKGTNCILVPSSQEIGNTPEEKACIRCGECATACPALLLPQQLFW HAKAEEYDKAASYNLKDCIECGCCSYVCPSDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLARLEEEKLAREAKA KEASERRQASMTGTDKNAVAEAMARIAAKKAAAAQAVTGESITEESSVTTTDTTEVPKGKAAVAAAIARAKAKKAAQANA DGTDTNGAETDRAKTDNAVNVDANDSISATDAIAQEAPLSQKDKVAAAIARAKAKKAAQQTDTAPLEPTETADSTSELSA ADDKKAKVAAAVARAKAKAKKAAQQAETAASDIEVSNTEVSVSDINDAEAIKKAKVAAAVARAKAKKAAQQAETNAENVL NQTTTPAVDSAANVHADVNADAETAVNAAATDIEVSNADVSVNDAEAIKKAKVAAAVARAKAKKIAAASAESKTESEIES VDEIQTEANVASPSIAAELETVTTEPEAVLPSVGSTAEPIETAPLSSDELKKARIAATIAKAKAKKAALAKEANASSDSS VTND
Specific function: May be part of a membrane complex involved in electron transport [H]
COG id: COG4656
COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Escherichia coli, GI1787916, Length=580, Percent_Identity=44.6551724137931, Blast_Score=501, Evalue=1e-143,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR010208 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR011538 - InterPro: IPR019554 [H]
Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 92290; Mature: 92290
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTLLDQLDKGTLWRSPGGIHPPEVKFLSNATPIGQLPLASMYLVPVPQVGENCTLAVKV CCCHHHHCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEE GDSVLKGMPLTQGTSIWHLPVHAPTSGTIVAIEPRASNHASALPVNTCVIAADGKDTWCE CHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCHHHHH LVQNQLDDLSHQQIVDKVRSAGIAGMGGAAFPTHIKLNPVSEIDLVIINGVECEPYISAD HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCH DRLMREYSQDILAGIGIIHRLLTPKRIVIAIEDNKPEAAKAMQTAVSQCGLPAGSIRVTV HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEE IPTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAYAIHQAVTQGKPLVERVVT EECCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHH VTGKNVSKPGNYWLPIGTPVDHVLTATEFTPEPDQKVIIGGPMMGHALANIQVPILKGTN HCCCCCCCCCCEEEECCCCHHHHEECCCCCCCCCCEEEECCCHHHHHHHCEEEEEEECCC CILVPSSQEIGNTPEEKACIRCGECATACPALLLPQQLFWHAKAEEYDKAASYNLKDCIE EEEECCCHHHCCCCCHHHHHHHCCHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHH CGCCSYVCPSDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLARLEEEKLAREAKA HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KEASERRQASMTGTDKNAVAEAMARIAAKKAAAAQAVTGESITEESSVTTTDTTEVPKGK HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH AAVAAAIARAKAKKAAQANADGTDTNGAETDRAKTDNAVNVDANDSISATDAIAQEAPLS HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCC QKDKVAAAIARAKAKKAAQQTDTAPLEPTETADSTSELSAADDKKAKVAAAVARAKAKAK HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHH KAAQQAETAASDIEVSNTEVSVSDINDAEAIKKAKVAAAVARAKAKKAAQQAETNAENVL HHHHHHHHHHHCCEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH NQTTTPAVDSAANVHADVNADAETAVNAAATDIEVSNADVSVNDAEAIKKAKVAAAVARA HCCCCCCCCCCCCEEECCCCCHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHHHHHH KAKKIAAASAESKTESEIESVDEIQTEANVASPSIAAELETVTTEPEAVLPSVGSTAEPI HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCC ETAPLSSDELKKARIAATIAKAKAKKAALAKEANASSDSSVTND CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MLTLLDQLDKGTLWRSPGGIHPPEVKFLSNATPIGQLPLASMYLVPVPQVGENCTLAVKV CCCHHHHCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEE GDSVLKGMPLTQGTSIWHLPVHAPTSGTIVAIEPRASNHASALPVNTCVIAADGKDTWCE CHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCHHHHH LVQNQLDDLSHQQIVDKVRSAGIAGMGGAAFPTHIKLNPVSEIDLVIINGVECEPYISAD HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCH DRLMREYSQDILAGIGIIHRLLTPKRIVIAIEDNKPEAAKAMQTAVSQCGLPAGSIRVTV HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEE IPTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAYAIHQAVTQGKPLVERVVT EECCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHH VTGKNVSKPGNYWLPIGTPVDHVLTATEFTPEPDQKVIIGGPMMGHALANIQVPILKGTN HCCCCCCCCCCEEEECCCCHHHHEECCCCCCCCCCEEEECCCHHHHHHHCEEEEEEECCC CILVPSSQEIGNTPEEKACIRCGECATACPALLLPQQLFWHAKAEEYDKAASYNLKDCIE EEEECCCHHHCCCCCHHHHHHHCCHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHH CGCCSYVCPSDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLARLEEEKLAREAKA HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KEASERRQASMTGTDKNAVAEAMARIAAKKAAAAQAVTGESITEESSVTTTDTTEVPKGK HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH AAVAAAIARAKAKKAAQANADGTDTNGAETDRAKTDNAVNVDANDSISATDAIAQEAPLS HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCC QKDKVAAAIARAKAKKAAQQTDTAPLEPTETADSTSELSAADDKKAKVAAAVARAKAKAK HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHH KAAQQAETAASDIEVSNTEVSVSDINDAEAIKKAKVAAAVARAKAKKAAQQAETNAENVL HHHHHHHHHHHCCEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH NQTTTPAVDSAANVHADVNADAETAVNAAATDIEVSNADVSVNDAEAIKKAKVAAAVARA HCCCCCCCCCCCCEEECCCCCHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHHHHHH KAKKIAAASAESKTESEIESVDEIQTEANVASPSIAAELETVTTEPEAVLPSVGSTAEPI HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCC ETAPLSSDELKKARIAATIAKAKAKKAALAKEANASSDSSVTND CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: 4Fe-4S clusters [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA