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The map label for this gene is ygcF [H]

Identifier: 126174470

GI number: 126174470

Start: 2608400

End: 2609068

Strand: Reverse

Name: ygcF [H]

Synonym: Sbal_2254

Alternate gene names: 126174470

Gene position: 2609068-2608400 (Counterclockwise)

Preceding gene: 126174473

Following gene: 126174468

Centisome position: 50.89

GC content: 47.38

Gene sequence:

>669_bases
ATGAACTACCCAGTCAACGAAGTATTTGAAACCATTCAAGGTGAAGGTGTCTTTACCGGAGTGCCCGCCATATTTGTCCG
CCTGCAAGGTTGTCCCGTGGGATGTGCTTGGTGCGATACGAAACAGACATGGGATGTGCTTGAAGTGAATAAAGTGATGC
CAGAGCAAGTCATTAGCGTAGACGGCACTATTGGTCGCTGGGCAGATCATACGGCGCAAAGTCTTATTGCGGCTTTTCAT
GCCAAAGGTTTCACTGCGCGCCATATCGTGATCACCGGCGGCGAGCCTTGTATGTACGATTTATGCGAATTAACTGAAAC
CTTGCACAGCCAAGGCTTTGCCACCCAAATCGAAACCAGTGGCACCTTCGACATCAATTGTGCCGATGATACTTGGGTAA
CGGTATCGCCCAAGGTGAACATGAAAGGTGGCTATAAGGTATTAACGCAGGCGCTGAACCGTGCCAATGAGATCAAGCAT
CCCATCGCCACTGAAAATCACATTGCTGAACTGGATGAGTTACTGCAAGACATCGATATTTCCGCTAAAACGATTTGCCT
ACAGCCGATTAGCCAAAAGCCCAGAGCGACTGAACTGGCTATGAAGGTGTGTATTGCCCGTAATTGGCGTTTATCAATCC
AAACCCATAAGTATTTGAATATTGATTAA

Upstream 100 bases:

>100_bases
ACTCTGGCGATCTAGATCAAATAGGCTTTCTCGGCGCAAAAACTTGCAGCTCAAGCTAAAATCCACTATAAATGCCGCCC
CAGAAAAGTGGAACGCCAGC

Downstream 100 bases:

>100_bases
TGCCCTTCAGTTAATCTATAAACGATAAAAAAACGCCTCACAATTGTGGGGCGTTTTTTATGGCTGACGTTTAGCGGTGG
ACTTTGAAGCCATCGACTCA

Product: radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVNKVMPEQVISVDGTIGRWADHTAQSLIAAFH
AKGFTARHIVITGGEPCMYDLCELTETLHSQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKH
PIATENHIAELDELLQDIDISAKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID

Sequences:

>Translated_222_residues
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVNKVMPEQVISVDGTIGRWADHTAQSLIAAFH
AKGFTARHIVITGGEPCMYDLCELTETLHSQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKH
PIATENHIAELDELLQDIDISAKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID
>Mature_222_residues
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVNKVMPEQVISVDGTIGRWADHTAQSLIAAFH
AKGFTARHIVITGGEPCMYDLCELTETLHSQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKH
PIATENHIAELDELLQDIDISAKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=222, Percent_Identity=59.009009009009, Blast_Score=283, Evalue=7e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24647; Mature: 24647

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVNKVMPEQVISV
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHCHHHHHCC
DGTIGRWADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLCELTETLHSQGFATQIETS
CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC
GTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKHPIATENHIAELDELLQDIDI
CEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
SAKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID
CCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECEEEECC
>Mature Secondary Structure
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVNKVMPEQVISV
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHCHHHHHCC
DGTIGRWADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLCELTETLHSQGFATQIETS
CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC
GTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKHPIATENHIAELDELLQDIDI
CEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
SAKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID
CCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]