Click here to switch to the map view.

The map label for this gene is ytfM [H]

Identifier: 126174129

GI number: 126174129

Start: 2208865

End: 2210718

Strand: Reverse

Name: ytfM [H]

Synonym: Sbal_1903

Alternate gene names: 126174129

Gene position: 2210718-2208865 (Counterclockwise)

Preceding gene: 126174140

Following gene: 126174128

Centisome position: 43.12

GC content: 47.03

Gene sequence:

>1854_bases
GTGCAGCCATTTTTGCAAATCACCTCACATTACTTTCGTTTTTGCTTATTTCTGAGTCTGATTTCAGTCACATCCGTCGC
TGCGGCGGCAGATGAATTTATTAAATTATCTGTCACAGGCGTGAATGAAGCTCTGCAACGTAACATAGTTGCGCACTTAG
GCACCTTACCCGAATCCGAGGTGCAGCGACGTGCCTTTCTGTTTAATGTCGATGACAATGTCAGCACAGCCTTAGAATCC
ATGGGTTACTATCATGGCGAAGTGGAAGAAAAACTGACGGAACATGACAAGGGACCGTGGGAACTAAAACTGGTGATCAC
TGCCGGCGAGCCAACCATAGTGCAGTGGGTCGATATTAACTTCAGTGGTGAAATGCTCGATGATCGCGCCTTCGATCAAT
GGCTGGCAAAGGTCAACCTTAAGCCTGGCGATGTGCTCAACCACGGTGTGTATAGCGACGTAAAATCGCAACTGGTCGCC
TTAGCTCTGGCCCGAGGCTACTTCGATGGCGAATTTACGGAATCACAGATTAAAGTTAACCGCGACATCAATACCGCGCA
GGTAAGTTTGCATTTTGACTCTGGCAAACGTTATAAATTTGGCCAAGTCAGCTTCGAAGGCCATACTTTAGAACCTGAAA
TTTTAGAAAAACTTATCCCCTTTAAAGAAGGCGCCTCCTACTCGACTCGCCGTGTGGGCGCGCTGAATCGCCAGTTATTA
GACACGGGCTATTTCGCCAATATTAAAGTGATCCCGCAAATCGACGGTGTCGAAGAGAGTCATATTCCGGTGCTGGTGGA
ATTAACCCCTAAGGCAAGCCACGCCATTGAGCTCGGTTTTGGTGGTGATATTGGTAAGACGGATCAAGCTTTCGACCCAA
GAGTGCGCGTGACTTGGCGGACGCCACAAATCAATAAATACGGCCATTCACAGGAGACCAGCCTTGAATGGTCACCGGAT
AGACCAAAGTTATTAACCACTTATACTATCCCCTTGACGCATCCCTTAGATGATCAATTAAAAATCCGCGTCGGTTTGCT
ACGGGACAAATACGGTGTGACCCAAGTGTATGACGCCGAGAATCGCGATTTTAGTAACACAGGTCAGCTTGAATCGACTA
AATATCTTCTTGGGCTATTACGCCAACAAAGACTCGAAAACCAATGGCTAATGAGTTATTCGCTTGAGGCTATTCGCGAA
GAATATACTCAGTCTGATGTCGATTATATGCCGTCGTTTTATTTGGCGGGGATTAACTTTTCGCGGACAACGCGCGGGGA
TAATTCACTCGATCCTAAGTCCGGTTTTAGGCAGATTTACAGCCTAGATTATGCCGACCCCTATTTAGGTTCAGAAACCC
GCTTAGCGCGCCTCCAAGCTAAATTTAAATGGATTGATACCTTCTTCGACAACCACAGAATTGTCGCGCGTATCGATTTA
GCCGCCAACTTAGCCAACGAAAATGATCTGGCCTCTATTCCGCCTTCGCTGCGCTATTTTGCCGGTGGCGATCAGAGTGT
GCGGGGTTATGGTTATCAAGAATTGGGCCCCTATTTAGATTATGTCGCAGATGATGGCAAGACCAATCGCGAGGTCATAG
GTGGCCGCTATTTAATGGTTGGCAGTTTAGAATATCAATATTATGTGACCCCCACTTGGCGGGTCGGTACCTTTATCGAT
GCGGGTAACGCCTTCGATAATAATCAATTTGAACCTGTTGTCTCAGTTGGTGGCGGTATCCATTGGATCTCCCCCATTGG
CCCAATCAAACTGGATTTAGGGGTTGGATTGAAAGAAACCGATACCATTGAAAGATCATGGCGTATTCACCTGACCATGG
GGACAGATCTATGA

Upstream 100 bases:

>100_bases
GTAGCGTCCTTTGTAACCATTTCATCGTGTAATTTCAATCATCTCCTTGCCTGTTGGTTTTATTCTGGCGACAATGATGC
CACATCACAGGGACTATAAA

Downstream 100 bases:

>100_bases
GCCAGCCCCCAGAGCATAATAAGCCACCCGAACAAGACACCGTAGACAGCCCCATTACGGAAGTCACTGCAGCCATTGCG
AGTTCTGTCACCCAATCCGT

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 617; Mature: 617

Protein sequence:

>617_residues
MQPFLQITSHYFRFCLFLSLISVTSVAAAADEFIKLSVTGVNEALQRNIVAHLGTLPESEVQRRAFLFNVDDNVSTALES
MGYYHGEVEEKLTEHDKGPWELKLVITAGEPTIVQWVDINFSGEMLDDRAFDQWLAKVNLKPGDVLNHGVYSDVKSQLVA
LALARGYFDGEFTESQIKVNRDINTAQVSLHFDSGKRYKFGQVSFEGHTLEPEILEKLIPFKEGASYSTRRVGALNRQLL
DTGYFANIKVIPQIDGVEESHIPVLVELTPKASHAIELGFGGDIGKTDQAFDPRVRVTWRTPQINKYGHSQETSLEWSPD
RPKLLTTYTIPLTHPLDDQLKIRVGLLRDKYGVTQVYDAENRDFSNTGQLESTKYLLGLLRQQRLENQWLMSYSLEAIRE
EYTQSDVDYMPSFYLAGINFSRTTRGDNSLDPKSGFRQIYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARIDL
AANLANENDLASIPPSLRYFAGGDQSVRGYGYQELGPYLDYVADDGKTNREVIGGRYLMVGSLEYQYYVTPTWRVGTFID
AGNAFDNNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKETDTIERSWRIHLTMGTDL

Sequences:

>Translated_617_residues
MQPFLQITSHYFRFCLFLSLISVTSVAAAADEFIKLSVTGVNEALQRNIVAHLGTLPESEVQRRAFLFNVDDNVSTALES
MGYYHGEVEEKLTEHDKGPWELKLVITAGEPTIVQWVDINFSGEMLDDRAFDQWLAKVNLKPGDVLNHGVYSDVKSQLVA
LALARGYFDGEFTESQIKVNRDINTAQVSLHFDSGKRYKFGQVSFEGHTLEPEILEKLIPFKEGASYSTRRVGALNRQLL
DTGYFANIKVIPQIDGVEESHIPVLVELTPKASHAIELGFGGDIGKTDQAFDPRVRVTWRTPQINKYGHSQETSLEWSPD
RPKLLTTYTIPLTHPLDDQLKIRVGLLRDKYGVTQVYDAENRDFSNTGQLESTKYLLGLLRQQRLENQWLMSYSLEAIRE
EYTQSDVDYMPSFYLAGINFSRTTRGDNSLDPKSGFRQIYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARIDL
AANLANENDLASIPPSLRYFAGGDQSVRGYGYQELGPYLDYVADDGKTNREVIGGRYLMVGSLEYQYYVTPTWRVGTFID
AGNAFDNNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKETDTIERSWRIHLTMGTDL
>Mature_617_residues
MQPFLQITSHYFRFCLFLSLISVTSVAAAADEFIKLSVTGVNEALQRNIVAHLGTLPESEVQRRAFLFNVDDNVSTALES
MGYYHGEVEEKLTEHDKGPWELKLVITAGEPTIVQWVDINFSGEMLDDRAFDQWLAKVNLKPGDVLNHGVYSDVKSQLVA
LALARGYFDGEFTESQIKVNRDINTAQVSLHFDSGKRYKFGQVSFEGHTLEPEILEKLIPFKEGASYSTRRVGALNRQLL
DTGYFANIKVIPQIDGVEESHIPVLVELTPKASHAIELGFGGDIGKTDQAFDPRVRVTWRTPQINKYGHSQETSLEWSPD
RPKLLTTYTIPLTHPLDDQLKIRVGLLRDKYGVTQVYDAENRDFSNTGQLESTKYLLGLLRQQRLENQWLMSYSLEAIRE
EYTQSDVDYMPSFYLAGINFSRTTRGDNSLDPKSGFRQIYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARIDL
AANLANENDLASIPPSLRYFAGGDQSVRGYGYQELGPYLDYVADDGKTNREVIGGRYLMVGSLEYQYYVTPTWRVGTFID
AGNAFDNNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKETDTIERSWRIHLTMGTDL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=617, Percent_Identity=33.387358184765, Blast_Score=317, Evalue=1e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 69730; Mature: 69730

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPFLQITSHYFRFCLFLSLISVTSVAAAADEFIKLSVTGVNEALQRNIVAHLGTLPESE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCHHH
VQRRAFLFNVDDNVSTALESMGYYHGEVEEKLTEHDKGPWELKLVITAGEPTIVQWVDIN
HCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEEC
FSGEMLDDRAFDQWLAKVNLKPGDVLNHGVYSDVKSQLVALALARGYFDGEFTESQIKVN
CCCCCCCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
RDINTAQVSLHFDSGKRYKFGQVSFEGHTLEPEILEKLIPFKEGASYSTRRVGALNRQLL
CCCCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
DTGYFANIKVIPQIDGVEESHIPVLVELTPKASHAIELGFGGDIGKTDQAFDPRVRVTWR
CCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
TPQINKYGHSQETSLEWSPDRPKLLTTYTIPLTHPLDDQLKIRVGLLRDKYGVTQVYDAE
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEECC
NRDFSNTGQLESTKYLLGLLRQQRLENQWLMSYSLEAIREEYTQSDVDYMPSFYLAGINF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEECCCC
SRTTRGDNSLDPKSGFRQIYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARIDL
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
AANLANENDLASIPPSLRYFAGGDQSVRGYGYQELGPYLDYVADDGKTNREVIGGRYLMV
EHCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCHHHHHHCCCCCCCCEEECCEEEEE
GSLEYQYYVTPTWRVGTFIDAGNAFDNNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKET
EEEEEEEEEECCEEEEEEEECCCCCCCCCCCEEEECCCCEEEECCCCCEEEEECCCCCCC
DTIERSWRIHLTMGTDL
CCCCCEEEEEEEECCCC
>Mature Secondary Structure
MQPFLQITSHYFRFCLFLSLISVTSVAAAADEFIKLSVTGVNEALQRNIVAHLGTLPESE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCHHH
VQRRAFLFNVDDNVSTALESMGYYHGEVEEKLTEHDKGPWELKLVITAGEPTIVQWVDIN
HCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEEC
FSGEMLDDRAFDQWLAKVNLKPGDVLNHGVYSDVKSQLVALALARGYFDGEFTESQIKVN
CCCCCCCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
RDINTAQVSLHFDSGKRYKFGQVSFEGHTLEPEILEKLIPFKEGASYSTRRVGALNRQLL
CCCCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
DTGYFANIKVIPQIDGVEESHIPVLVELTPKASHAIELGFGGDIGKTDQAFDPRVRVTWR
CCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
TPQINKYGHSQETSLEWSPDRPKLLTTYTIPLTHPLDDQLKIRVGLLRDKYGVTQVYDAE
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEECC
NRDFSNTGQLESTKYLLGLLRQQRLENQWLMSYSLEAIREEYTQSDVDYMPSFYLAGINF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEECCCC
SRTTRGDNSLDPKSGFRQIYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARIDL
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
AANLANENDLASIPPSLRYFAGGDQSVRGYGYQELGPYLDYVADDGKTNREVIGGRYLMV
EHCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCHHHHHHCCCCCCCCEEECCEEEEE
GSLEYQYYVTPTWRVGTFIDAGNAFDNNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKET
EEEEEEEEEECCEEEEEEEECCCCCCCCCCCEEEECCCCEEEECCCCCEEEEECCCCCCC
DTIERSWRIHLTMGTDL
CCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]