| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is hypF [H]
Identifier: 126174110
GI number: 126174110
Start: 2182616
End: 2185129
Strand: Reverse
Name: hypF [H]
Synonym: Sbal_1884
Alternate gene names: 126174110
Gene position: 2185129-2182616 (Counterclockwise)
Preceding gene: 126174111
Following gene: 126174109
Centisome position: 42.62
GC content: 49.64
Gene sequence:
>2514_bases ATGATTAGGAGGCCAAAAGTTAAGTCACAACGCATGCAGCCACATAGACATAATAGTCGCCACAAAAAGCACAGTGATCT GCAGATAAAGCGCAGGCTGGCATTGGAATACCTTGTCCACAAGGGCGCCGCGCTAAAGCGTTGTCAGCTACACGTCACTG GCATAGTGCAAGGGGTGGGATTTCGCCCCTTTGTCTATCGTTATGCCCTTGAATTTCAACTAACAGGTACTGTGCTCAAC AATGCCAAGGGCGTGACCATTGAGCTGCAAGGCACGGAAGAAAACCTCACGCAATTTATCACAACGCTCAATACCACCCC ACCGCCACTGGCCCGTATCGACAATATCACCCAAACACCGCTGCCGATTTTATTAAGCGAAACCACATTTGAAATTATAA AAAGCGACAGCCATAAGGACGATGACCCAAGTTCACCGATAGGTGCGCAGGTGGCGGTATCTGCGGATAAAAGTACCTGC CAAGATTGCTTGAACGACATGCATAATCCTGATGATCGCCACTTTGGCTATGCTTTTACAAACTGCACTAACTGTGGCCC TCGATACACCATAATCAATGCTTTACCCTATGATAGACACAACACAGCCATGGCCGATTTTGACATGTGCCCCGAGTGCG CCAAAGCATATCAAAACCCACTCGACCGCCGCTATCATGCCCAGCCAGTCAGTTGCCCAGTCTGCGGCCCCAGACTCAGT TTAAAAACACCGCAAGGGGAATACATCATTCTCAATACCTCAAATTTCAGCACACCTGAATTGAGTACGGACCTTGCGGT ACTGACAGCGGCGGCTGACAGGTTACACCAAGGGCAGATTCTGGCAATTAAGGGACTGGGCGGATTTCACTTAATCTGTG ATGCCCGTAACGACAATGCCGTCAACACTCTTAGGCTGCGAAAACAGCGCCAAGCCAAGCCGCTAGCGGTGATGATGGCG GATATCCAGATGGCGCAGCACTATGTCACAGGTACGGATGCCGAGTGGCAAGTACTGAGTTCGCAGGAGCGGCCCATAGT GCTGATGAGCAGTCGCGCCGAACATGATCTCAGCTTAGCTGTCGCCCCTAATCTGAATAAACTCGGGGTATTTTTACCCT ACACACCGCTACATCATTTACTGTTAGGTCTCTTCAAAGGGCCATTGGTCGCGACCAGCGCTAATGTGTCAGGTGAGCCT ATCATCACAGATTGTGACGAGCTTATTCGCCACTTAAGCCATGTTATGGATGCAATAGTTGATCATAATCGGCCGATTAT TAATGGCTGTGATGACAGTGTGGTGCAGGTGATTCAGCCCAACATGTATTTGCCTGCAGAGGTGCAAGTGCTGCGTCTCG CCCGTGGTTATGCGCCCTTAAGTTTTCCACTTGATACACCGCTAACCCAATCAATTTTGGCCGTGGGCGCACAGCAAAAA AATGCTATCGCCCTAGGCTTTGGCAACAATGTGTTTTTAAGTCCCCATATTGGCGATTTATTCAGTGTCAGCGCCGAGCA CTATTTTGAGCGCACCTTAGCGACCTTCGCGCGGCTGTATCACTTTGCGCCCAATCTCATTGTTCGCGATAAACACCCAG ATTATGCCCCCTCACGCTGGGCTGAAATGCACTCAAACTCAAATGTAGAACTCAGCGATACCTGCCAATGTTTAACTGTG CAACATCACCATGCCCATGTGCTCAGCGTGATGGCGGTTAATCAATACCGAGAACCTGTATTGGGTTTTAGTTTTGATGG CACAGGGCTTGGCGACGATGGCAGTTTATGGGGCGGTGAAGTGTTATTAACCACGCTCGATAAAGCGCAGCGACTGGCCC ATTTTGAGCCCATAGCGCTGCTGGGCGGCGAACAAGCCATTAAGCAACCCGTGCGGTTGTTACTGGCATTATTGTTCGAG CAAATGAGCCTTGATGACGTGCTCGCGCTGAACTTGCCCATTATCTCAAGCATGAGTCCAAATACCTTAACTAATTTATA TAAAATCTGGCAGAACGGTAGCGCGATAAAAACCTCCTCTGTCGGGCGACTGTTCGATGCCCTCGCCTGCGCCTTAGGCT TAATCGAAACCACACTGTTTGAAGGTCAAGCGGGAATGGCGATAGAAGCCGCGGCCAATCGCGCCGATGCAATAGCCCTT GAAGCCATGTCGCTTAACTTACCTCTTGACGTCGACCAGTGGCGCAGCAGTGAAATGTTCAAGCAGATTGTTAAATTAAT GACTGAAAAACCGCTAACGGACAACAGACGAGATGCCATCGCCCGCGCCTTTCTACACACATTAGGTGATGCTATCTGTG ATTATGCAGCCCAGTATCAACACATCCCAACCGTGCTCTGCGGCGGCGTATTCCAAAATAAATACCTATTGGAATATTGC CTGAGCAAACTCTGGGCCCAAGGCAATAAAGTGTTATCCAGTCAACAGATCCCCATCAATGATGGCGGCATCGCCCTAGG CCAACTCTGGTATGGCATTCATCAGAATCAATAA
Upstream 100 bases:
>100_bases GGCAAAAACTTTCCCTTAGTGATCAATCGTAGTCTAGATTTAGACGGCGATAACTTAGCCGTTGGCGCACTTTACGTTAA GCAGCGCCAACTGAATACCC
Downstream 100 bases:
>100_bases CCTTACTTATTTGATAACCCCTGATGTTCGCTCGCCATTTTTATCCCCATAAACCTGACGAACATCAAAGATCTGCAGCG CAATTTGTATCACACTCAAC
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 837; Mature: 837
Protein sequence:
>837_residues MIRRPKVKSQRMQPHRHNSRHKKHSDLQIKRRLALEYLVHKGAALKRCQLHVTGIVQGVGFRPFVYRYALEFQLTGTVLN NAKGVTIELQGTEENLTQFITTLNTTPPPLARIDNITQTPLPILLSETTFEIIKSDSHKDDDPSSPIGAQVAVSADKSTC QDCLNDMHNPDDRHFGYAFTNCTNCGPRYTIINALPYDRHNTAMADFDMCPECAKAYQNPLDRRYHAQPVSCPVCGPRLS LKTPQGEYIILNTSNFSTPELSTDLAVLTAAADRLHQGQILAIKGLGGFHLICDARNDNAVNTLRLRKQRQAKPLAVMMA DIQMAQHYVTGTDAEWQVLSSQERPIVLMSSRAEHDLSLAVAPNLNKLGVFLPYTPLHHLLLGLFKGPLVATSANVSGEP IITDCDELIRHLSHVMDAIVDHNRPIINGCDDSVVQVIQPNMYLPAEVQVLRLARGYAPLSFPLDTPLTQSILAVGAQQK NAIALGFGNNVFLSPHIGDLFSVSAEHYFERTLATFARLYHFAPNLIVRDKHPDYAPSRWAEMHSNSNVELSDTCQCLTV QHHHAHVLSVMAVNQYREPVLGFSFDGTGLGDDGSLWGGEVLLTTLDKAQRLAHFEPIALLGGEQAIKQPVRLLLALLFE QMSLDDVLALNLPIISSMSPNTLTNLYKIWQNGSAIKTSSVGRLFDALACALGLIETTLFEGQAGMAIEAAANRADAIAL EAMSLNLPLDVDQWRSSEMFKQIVKLMTEKPLTDNRRDAIARAFLHTLGDAICDYAAQYQHIPTVLCGGVFQNKYLLEYC LSKLWAQGNKVLSSQQIPINDGGIALGQLWYGIHQNQ
Sequences:
>Translated_837_residues MIRRPKVKSQRMQPHRHNSRHKKHSDLQIKRRLALEYLVHKGAALKRCQLHVTGIVQGVGFRPFVYRYALEFQLTGTVLN NAKGVTIELQGTEENLTQFITTLNTTPPPLARIDNITQTPLPILLSETTFEIIKSDSHKDDDPSSPIGAQVAVSADKSTC QDCLNDMHNPDDRHFGYAFTNCTNCGPRYTIINALPYDRHNTAMADFDMCPECAKAYQNPLDRRYHAQPVSCPVCGPRLS LKTPQGEYIILNTSNFSTPELSTDLAVLTAAADRLHQGQILAIKGLGGFHLICDARNDNAVNTLRLRKQRQAKPLAVMMA DIQMAQHYVTGTDAEWQVLSSQERPIVLMSSRAEHDLSLAVAPNLNKLGVFLPYTPLHHLLLGLFKGPLVATSANVSGEP IITDCDELIRHLSHVMDAIVDHNRPIINGCDDSVVQVIQPNMYLPAEVQVLRLARGYAPLSFPLDTPLTQSILAVGAQQK NAIALGFGNNVFLSPHIGDLFSVSAEHYFERTLATFARLYHFAPNLIVRDKHPDYAPSRWAEMHSNSNVELSDTCQCLTV QHHHAHVLSVMAVNQYREPVLGFSFDGTGLGDDGSLWGGEVLLTTLDKAQRLAHFEPIALLGGEQAIKQPVRLLLALLFE QMSLDDVLALNLPIISSMSPNTLTNLYKIWQNGSAIKTSSVGRLFDALACALGLIETTLFEGQAGMAIEAAANRADAIAL EAMSLNLPLDVDQWRSSEMFKQIVKLMTEKPLTDNRRDAIARAFLHTLGDAICDYAAQYQHIPTVLCGGVFQNKYLLEYC LSKLWAQGNKVLSSQQIPINDGGIALGQLWYGIHQNQ >Mature_837_residues MIRRPKVKSQRMQPHRHNSRHKKHSDLQIKRRLALEYLVHKGAALKRCQLHVTGIVQGVGFRPFVYRYALEFQLTGTVLN NAKGVTIELQGTEENLTQFITTLNTTPPPLARIDNITQTPLPILLSETTFEIIKSDSHKDDDPSSPIGAQVAVSADKSTC QDCLNDMHNPDDRHFGYAFTNCTNCGPRYTIINALPYDRHNTAMADFDMCPECAKAYQNPLDRRYHAQPVSCPVCGPRLS LKTPQGEYIILNTSNFSTPELSTDLAVLTAAADRLHQGQILAIKGLGGFHLICDARNDNAVNTLRLRKQRQAKPLAVMMA DIQMAQHYVTGTDAEWQVLSSQERPIVLMSSRAEHDLSLAVAPNLNKLGVFLPYTPLHHLLLGLFKGPLVATSANVSGEP IITDCDELIRHLSHVMDAIVDHNRPIINGCDDSVVQVIQPNMYLPAEVQVLRLARGYAPLSFPLDTPLTQSILAVGAQQK NAIALGFGNNVFLSPHIGDLFSVSAEHYFERTLATFARLYHFAPNLIVRDKHPDYAPSRWAEMHSNSNVELSDTCQCLTV QHHHAHVLSVMAVNQYREPVLGFSFDGTGLGDDGSLWGGEVLLTTLDKAQRLAHFEPIALLGGEQAIKQPVRLLLALLFE QMSLDDVLALNLPIISSMSPNTLTNLYKIWQNGSAIKTSSVGRLFDALACALGLIETTLFEGQAGMAIEAAANRADAIAL EAMSLNLPLDVDQWRSSEMFKQIVKLMTEKPLTDNRRDAIARAFLHTLGDAICDYAAQYQHIPTVLCGGVFQNKYLLEYC LSKLWAQGNKVLSSQQIPINDGGIALGQLWYGIHQNQ
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=794, Percent_Identity=36.5239294710327, Blast_Score=389, Evalue=1e-109,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 92662; Mature: 92662
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRRPKVKSQRMQPHRHNSRHKKHSDLQIKRRLALEYLVHKGAALKRCQLHVTGIVQGVG CCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEEEEEEHHHCCC FRPFVYRYALEFQLTGTVLNNAKGVTIELQGTEENLTQFITTLNTTPPPLARIDNITQTP CCCEEEEEEEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHHCCCCCCC LPILLSETTFEIIKSDSHKDDDPSSPIGAQVAVSADKSTCQDCLNDMHNPDDRHFGYAFT CCEEECHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCEEEC NCTNCGPRYTIINALPYDRHNTAMADFDMCPECAKAYQNPLDRRYHAQPVSCPVCGPRLS CCCCCCCCEEEEECCCCCCCCCCCCCHHCCHHHHHHHHCHHHHCCCCCCCCCCCCCCCCE LKTPQGEYIILNTSNFSTPELSTDLAVLTAAADRLHQGQILAIKGLGGFHLICDARNDNA EECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCC VNTLRLRKQRQAKPLAVMMADIQMAQHYVTGTDAEWQVLSSQERPIVLMSSRAEHDLSLA HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHEECCCCCCEEEEECCCCCCEEEE VAPNLNKLGVFLPYTPLHHLLLGLFKGPLVATSANVSGEPIITDCDELIRHLSHVMDAIV ECCCCCCCEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH DHNRPIINGCDDSVVQVIQPNMYLPAEVQVLRLARGYAPLSFPLDTPLTQSILAVGAQQK HCCCCEECCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC NAIALGFGNNVFLSPHIGDLFSVSAEHYFERTLATFARLYHFAPNLIVRDKHPDYAPSRW CEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHH AEMHSNSNVELSDTCQCLTVQHHHAHVLSVMAVNQYREPVLGFSFDGTGLGDDGSLWGGE HHHCCCCCCCHHCCEEEEEEEHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCH VLLTTLDKAQRLAHFEPIALLGGEQAIKQPVRLLLALLFEQMSLDDVLALNLPIISSMSP HHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC NTLTNLYKIWQNGSAIKTSSVGRLFDALACALGLIETTLFEGQAGMAIEAAANRADAIAL HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHCCCCCEEEE EAMSLNLPLDVDQWRSSEMFKQIVKLMTEKPLTDNRRDAIARAFLHTLGDAICDYAAQYQ EEEEECCCCCHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH HIPTVLCGGVFQNKYLLEYCLSKLWAQGNKVLSSQQIPINDGGIALGQLWYGIHQNQ CCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEHHHHHHHHCCCC >Mature Secondary Structure MIRRPKVKSQRMQPHRHNSRHKKHSDLQIKRRLALEYLVHKGAALKRCQLHVTGIVQGVG CCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEEEEEEHHHCCC FRPFVYRYALEFQLTGTVLNNAKGVTIELQGTEENLTQFITTLNTTPPPLARIDNITQTP CCCEEEEEEEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHHCCCCCCC LPILLSETTFEIIKSDSHKDDDPSSPIGAQVAVSADKSTCQDCLNDMHNPDDRHFGYAFT CCEEECHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCEEEC NCTNCGPRYTIINALPYDRHNTAMADFDMCPECAKAYQNPLDRRYHAQPVSCPVCGPRLS CCCCCCCCEEEEECCCCCCCCCCCCCHHCCHHHHHHHHCHHHHCCCCCCCCCCCCCCCCE LKTPQGEYIILNTSNFSTPELSTDLAVLTAAADRLHQGQILAIKGLGGFHLICDARNDNA EECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCC VNTLRLRKQRQAKPLAVMMADIQMAQHYVTGTDAEWQVLSSQERPIVLMSSRAEHDLSLA HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHEECCCCCCEEEEECCCCCCEEEE VAPNLNKLGVFLPYTPLHHLLLGLFKGPLVATSANVSGEPIITDCDELIRHLSHVMDAIV ECCCCCCCEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH DHNRPIINGCDDSVVQVIQPNMYLPAEVQVLRLARGYAPLSFPLDTPLTQSILAVGAQQK HCCCCEECCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC NAIALGFGNNVFLSPHIGDLFSVSAEHYFERTLATFARLYHFAPNLIVRDKHPDYAPSRW CEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHH AEMHSNSNVELSDTCQCLTVQHHHAHVLSVMAVNQYREPVLGFSFDGTGLGDDGSLWGGE HHHCCCCCCCHHCCEEEEEEEHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCH VLLTTLDKAQRLAHFEPIALLGGEQAIKQPVRLLLALLFEQMSLDDVLALNLPIISSMSP HHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC NTLTNLYKIWQNGSAIKTSSVGRLFDALACALGLIETTLFEGQAGMAIEAAANRADAIAL HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHCCCCCEEEE EAMSLNLPLDVDQWRSSEMFKQIVKLMTEKPLTDNRRDAIARAFLHTLGDAICDYAAQYQ EEEEECCCCCHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH HIPTVLCGGVFQNKYLLEYCLSKLWAQGNKVLSSQQIPINDGGIALGQLWYGIHQNQ CCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]