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The map label for this gene is yhcC [H]

Identifier: 126173417

GI number: 126173417

Start: 1361803

End: 1362732

Strand: Direct

Name: yhcC [H]

Synonym: Sbal_1179

Alternate gene names: 126173417

Gene position: 1361803-1362732 (Clockwise)

Preceding gene: 126173409

Following gene: 126173418

Centisome position: 26.56

GC content: 48.92

Gene sequence:

>930_bases
ATGGGGCTTGATGCATATGTGAACACCTTTGGTGCCGTTTGCAAGGCGCGATATGGTACGCGACTGCGAAAACTCACCAT
AGATGCCAAGTTTACTTGCCCCAACCGTGATGGCACCATGGGGCGTGGAGGTTGTACTTTCTGCAATGTGGCGTCATTTA
GCCACCAAACTGCTGATGTGCTGAGTATTACCGAACAGCTCGAACAGGGTAAGAGTCGTTATCGTGAGGCGAAACCTCAG
GCGCAAGCCGATAAATTTATTGCGTATTTTCAGGCTTACACGAGCACTTATGATGAGTATCAGGTGTTAATGGCTAAGTA
CGATGAAGCCGTTAAAGATGGCGAAATAGTGGGTTTGTGTGTAGGAACTCGCCCCGATTGTGTGCCAGATAATGTACTGG
ATTTACTGGCAAGTTATCAGGCAAACGGTGTTGATGTGTGGTTAGAACTTGGGTTGCAAACCGCTAAAGATGAAACGCTG
CGCAAGATCAATCGCGGCCATGATTTCGCCTGTTATTGTGACACAGTATCTAGGGCGAGATCTCGCGGTCTTAAGGTGTG
CACTCATCTTATTCTTGGCTTACCCGATGAAACCCATAGCGATTATATGGCGACCTTAGCCGCGGTATTGCAGCAGGGTG
TTGATGGCTTGAAGCTGCATCCTTTGCATGTCGTCGAAGGCAGCACTATGGCCAAGGCGTGGCGAAGTGGGCGCTTACCT
TTACTGAGTCTTGAAGATTATGCTCGCAGTGTCGGCGAGATGATCCGCCATACACCCGCGGAAGTGATTTTCCACCGCGT
CACTGCTTATGCGAAAAAACCTATGCTATTAGCACCAGATTGGTGTGCCTATCGATGGGATGGATTGGTGGCAATTGTGG
ATAATTTACAGCTTTATGGTGGACAAGGGCACGTATTAGCGCAACGATAG

Upstream 100 bases:

>100_bases
CTAAGCTTTTTCTTCTATTTGTTCACGTATTTTCTTTTCTATTTGTGATTTTATCTTGGTTATTCTCAATGAAGCGATAT
GAAATTTGGTGGGTGCTCTG

Downstream 100 bases:

>100_bases
AGGCAAGTTAGTGGGATACATTTCCTCCTTAAATGCTATGTCGTCGCTATTATTTTGTAAGTGTTTACTTACGACTATTA
GTTTGTTTTTTGTTAATTTT

Product: putative radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MGLDAYVNTFGAVCKARYGTRLRKLTIDAKFTCPNRDGTMGRGGCTFCNVASFSHQTADVLSITEQLEQGKSRYREAKPQ
AQADKFIAYFQAYTSTYDEYQVLMAKYDEAVKDGEIVGLCVGTRPDCVPDNVLDLLASYQANGVDVWLELGLQTAKDETL
RKINRGHDFACYCDTVSRARSRGLKVCTHLILGLPDETHSDYMATLAAVLQQGVDGLKLHPLHVVEGSTMAKAWRSGRLP
LLSLEDYARSVGEMIRHTPAEVIFHRVTAYAKKPMLLAPDWCAYRWDGLVAIVDNLQLYGGQGHVLAQR

Sequences:

>Translated_309_residues
MGLDAYVNTFGAVCKARYGTRLRKLTIDAKFTCPNRDGTMGRGGCTFCNVASFSHQTADVLSITEQLEQGKSRYREAKPQ
AQADKFIAYFQAYTSTYDEYQVLMAKYDEAVKDGEIVGLCVGTRPDCVPDNVLDLLASYQANGVDVWLELGLQTAKDETL
RKINRGHDFACYCDTVSRARSRGLKVCTHLILGLPDETHSDYMATLAAVLQQGVDGLKLHPLHVVEGSTMAKAWRSGRLP
LLSLEDYARSVGEMIRHTPAEVIFHRVTAYAKKPMLLAPDWCAYRWDGLVAIVDNLQLYGGQGHVLAQR
>Mature_308_residues
GLDAYVNTFGAVCKARYGTRLRKLTIDAKFTCPNRDGTMGRGGCTFCNVASFSHQTADVLSITEQLEQGKSRYREAKPQA
QADKFIAYFQAYTSTYDEYQVLMAKYDEAVKDGEIVGLCVGTRPDCVPDNVLDLLASYQANGVDVWLELGLQTAKDETLR
KINRGHDFACYCDTVSRARSRGLKVCTHLILGLPDETHSDYMATLAAVLQQGVDGLKLHPLHVVEGSTMAKAWRSGRLPL
LSLEDYARSVGEMIRHTPAEVIFHRVTAYAKKPMLLAPDWCAYRWDGLVAIVDNLQLYGGQGHVLAQR

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0486 [H]

Homologues:

Organism=Homo sapiens, GI23510283, Length=205, Percent_Identity=26.8292682926829, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI2367204, Length=308, Percent_Identity=57.1428571428571, Blast_Score=365, Evalue=1e-102,
Organism=Caenorhabditis elegans, GI133955098, Length=126, Percent_Identity=32.5396825396825, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6325171, Length=165, Percent_Identity=25.4545454545455, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19920684, Length=165, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 34309; Mature: 34177

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLDAYVNTFGAVCKARYGTRLRKLTIDAKFTCPNRDGTMGRGGCTFCNVASFSHQTADV
CCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCHHHHH
LSITEQLEQGKSRYREAKPQAQADKFIAYFQAYTSTYDEYQVLMAKYDEAVKDGEIVGLC
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEE
VGTRPDCVPDNVLDLLASYQANGVDVWLELGLQTAKDETLRKINRGHDFACYCDTVSRAR
ECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEHHHHHHHH
SRGLKVCTHLILGLPDETHSDYMATLAAVLQQGVDGLKLHPLHVVEGSTMAKAWRSGRLP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEECEEEEECCCHHHHHHHCCCCC
LLSLEDYARSVGEMIRHTPAEVIFHRVTAYAKKPMLLAPDWCAYRWDGLVAIVDNLQLYG
EEEHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEECCCHHHHHHCCHHEEEECCEEEC
GQGHVLAQR
CCCCEECCC
>Mature Secondary Structure 
GLDAYVNTFGAVCKARYGTRLRKLTIDAKFTCPNRDGTMGRGGCTFCNVASFSHQTADV
CCHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCHHHHH
LSITEQLEQGKSRYREAKPQAQADKFIAYFQAYTSTYDEYQVLMAKYDEAVKDGEIVGLC
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEE
VGTRPDCVPDNVLDLLASYQANGVDVWLELGLQTAKDETLRKINRGHDFACYCDTVSRAR
ECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEHHHHHHHH
SRGLKVCTHLILGLPDETHSDYMATLAAVLQQGVDGLKLHPLHVVEGSTMAKAWRSGRLP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEECEEEEECCCHHHHHHHCCCCC
LLSLEDYARSVGEMIRHTPAEVIFHRVTAYAKKPMLLAPDWCAYRWDGLVAIVDNLQLYG
EEEHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEECCCHHHHHHCCHHEEEECCEEEC
GQGHVLAQR
CCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]