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The map label for this gene is yicJ [H]

Identifier: 126173370

GI number: 126173370

Start: 1301262

End: 1302587

Strand: Reverse

Name: yicJ [H]

Synonym: Sbal_1130

Alternate gene names: 126173370

Gene position: 1302587-1301262 (Counterclockwise)

Preceding gene: 126173371

Following gene: 126173369

Centisome position: 25.4

GC content: 45.25

Gene sequence:

>1326_bases
ATGATTAGCATAAAAGAAAAAATAGCCTATGGGCTTGGCGACACTGCCAGCAACATCGTTTTTCAAACCGTTATGCTGTT
CCTTACCTTTTTTTACACCGACATTTTTGGCATTTCACCCGCCTTTGTCGGCACTATGTTTCTGCTAGTACGGTTAATTG
ATGCCGTCACCGATCCTTTAATGGGCGCATTGGCAGATCGCACGAACACGCGTTGGGGTAAATTCAGACCCTATTTACTC
TGGTTTGCCCTGCCCTTTGGGATTATCAGTGTATTGGCATTTACGACCCCAGATTTATCTGAAGATGGGAAAATGATTTA
TGCCTTCGTGACTTACACAGCATTGATGATGGTATATACCGCCATTAATATTCCCTATTGCGCCTTAGGTGGAGTACTGA
CGGCCGATCCCAAAGAGCGAGTTTCGGTGCAATCCTATCGGTTTGTGTTCGCTATGCTCGGTGGCTTACTTGTCTCAGGA
CTCACCCTGCCTCTCGTCGAATTTCTCGGTAAAGGTGACCAAGCAAAAGGGTATCAGCTAACGATTCTCGCCATGAGTAT
CTTAGGCGTTGCCATGTTTTTGGCCTGCTTCTGGGGCACAAAAGAGCGCTTACATCCGCCCGTGGATCAAAATTCCAGCT
TTAAACAAGACTTTACCTACCTATTACAAAATGACCAATGGCGAGTGTTATCCGCCGCTGCAGTTTGCCTATTATCCGGC
ATGGTATTGCGCACTAGCCTCGCCATTTACTACGTAAAATATTTTCTTAACCTGCCAGATATGATCACCCTTTTCATCAC
CTTAGGCATGGTGGGCAATATTTTTGGCTGCATTCTCGCAGAGCCATTAGCTAAGCGTGTTTGTAAGGTTAAAGCCTATA
TTGTGTTGCAAATTCTAGCCGCGACCCTGTGTGTACTGCACTTTTTTGTCCCTAAAGATCAAGTCATTCTCGCCTTTACT
CTTTATATTGTCTGGGGATTTACCTTCAATATGGCCACCCCATTACTCTGGGCTAAAATGGCGGATACGGTCGATTATGG
TCAATACAAAACCGGCGTGCGTATCACAGGCATGATTTACTCCTCGGTGATTTTCTTTATCAAGCTTGGAGTCGCGTTTG
GCGGTGCGGCGGCTGGATGGTTACTAGCAAGTTATGGCTATCAAGCCGATGCCGTTCAGAGTGAAACGACGCTCAATGGC
ATCTTAATTTCATTTACCCTTTATCCCGCTATCGGCTCAATTTTGGTCGCATTTATCATGCGTCGTTATACGCTAAATAA
CCAGAAAGTGGATGAAATCCATCTGGAATTAAATAGAGCCAGCTAA

Upstream 100 bases:

>100_bases
AGCCAAACCAGAACGATAAAGGCCAGTGGTCAAGCCTACAGCGACTTAATTCGCTCAAGGGCTCACTTTACTAATAACAA
TAATAAATAAGGCTAAAGCC

Downstream 100 bases:

>100_bases
TAAAAATATGCTAATCTTCAAGGCATTGTACTTTTCAGTACCTCTAATTTGAGATGATATGGCCACTATTTACGACGTTT
CGGTACTTGCAGGCGTTTCA

Product: sugar (glycoside-Pentoside-hexuronide) transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MISIKEKIAYGLGDTASNIVFQTVMLFLTFFYTDIFGISPAFVGTMFLLVRLIDAVTDPLMGALADRTNTRWGKFRPYLL
WFALPFGIISVLAFTTPDLSEDGKMIYAFVTYTALMMVYTAINIPYCALGGVLTADPKERVSVQSYRFVFAMLGGLLVSG
LTLPLVEFLGKGDQAKGYQLTILAMSILGVAMFLACFWGTKERLHPPVDQNSSFKQDFTYLLQNDQWRVLSAAAVCLLSG
MVLRTSLAIYYVKYFLNLPDMITLFITLGMVGNIFGCILAEPLAKRVCKVKAYIVLQILAATLCVLHFFVPKDQVILAFT
LYIVWGFTFNMATPLLWAKMADTVDYGQYKTGVRITGMIYSSVIFFIKLGVAFGGAAAGWLLASYGYQADAVQSETTLNG
ILISFTLYPAIGSILVAFIMRRYTLNNQKVDEIHLELNRAS

Sequences:

>Translated_441_residues
MISIKEKIAYGLGDTASNIVFQTVMLFLTFFYTDIFGISPAFVGTMFLLVRLIDAVTDPLMGALADRTNTRWGKFRPYLL
WFALPFGIISVLAFTTPDLSEDGKMIYAFVTYTALMMVYTAINIPYCALGGVLTADPKERVSVQSYRFVFAMLGGLLVSG
LTLPLVEFLGKGDQAKGYQLTILAMSILGVAMFLACFWGTKERLHPPVDQNSSFKQDFTYLLQNDQWRVLSAAAVCLLSG
MVLRTSLAIYYVKYFLNLPDMITLFITLGMVGNIFGCILAEPLAKRVCKVKAYIVLQILAATLCVLHFFVPKDQVILAFT
LYIVWGFTFNMATPLLWAKMADTVDYGQYKTGVRITGMIYSSVIFFIKLGVAFGGAAAGWLLASYGYQADAVQSETTLNG
ILISFTLYPAIGSILVAFIMRRYTLNNQKVDEIHLELNRAS
>Mature_441_residues
MISIKEKIAYGLGDTASNIVFQTVMLFLTFFYTDIFGISPAFVGTMFLLVRLIDAVTDPLMGALADRTNTRWGKFRPYLL
WFALPFGIISVLAFTTPDLSEDGKMIYAFVTYTALMMVYTAINIPYCALGGVLTADPKERVSVQSYRFVFAMLGGLLVSG
LTLPLVEFLGKGDQAKGYQLTILAMSILGVAMFLACFWGTKERLHPPVDQNSSFKQDFTYLLQNDQWRVLSAAAVCLLSG
MVLRTSLAIYYVKYFLNLPDMITLFITLGMVGNIFGCILAEPLAKRVCKVKAYIVLQILAATLCVLHFFVPKDQVILAFT
LYIVWGFTFNMATPLLWAKMADTVDYGQYKTGVRITGMIYSSVIFFIKLGVAFGGAAAGWLLASYGYQADAVQSETTLNG
ILISFTLYPAIGSILVAFIMRRYTLNNQKVDEIHLELNRAS

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Escherichia coli, GI87082306, Length=443, Percent_Identity=45.372460496614, Blast_Score=387, Evalue=1e-109,
Organism=Escherichia coli, GI1786466, Length=443, Percent_Identity=42.6636568848758, Blast_Score=370, Evalue=1e-104,
Organism=Escherichia coli, GI1787902, Length=444, Percent_Identity=32.8828828828829, Blast_Score=211, Evalue=6e-56,
Organism=Escherichia coli, GI48994989, Length=446, Percent_Identity=30.4932735426009, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI145693206, Length=447, Percent_Identity=29.082774049217, Blast_Score=185, Evalue=5e-48,
Organism=Escherichia coli, GI1790561, Length=450, Percent_Identity=28.6666666666667, Blast_Score=181, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48971; Mature: 48971

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS00872 NA_GALACTOSIDE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCCHHHHEEEEECCC
>Mature Secondary Structure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HHHHCCCCCHHHHEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]