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The map label for this gene is racD [C]

Identifier: 125625258

GI number: 125625258

Start: 2458449

End: 2459171

Strand: Reverse

Name: racD [C]

Synonym: llmg_2504

Alternate gene names: 125625258

Gene position: 2459171-2458449 (Counterclockwise)

Preceding gene: 125625259

Following gene: 125625257

Centisome position: 97.22

GC content: 34.72

Gene sequence:

>723_bases
ATGGAAAACTTCTTTACAATCTTGGGAGGAATGGGTACTCTTGCTACCGAAAGTTTTATTCATACTTTGAATAAACGAAC
AGAAGCTCATCGTGATCAGGATTATTTAAATTATATCGTGGTTAACCATGCGACGATTCCTGACCGGACAGAGTATATTA
AAAATCCTTCATTAGAAAATCCGGAAGAAAAATTGATTGATGATATAAAAATTCATAGTCAACTTTCACCAAAGTTCTTT
GTAGTTCCTTGTAACACTGCTCATTATTATTTTGATGAAATGCAAAAGGCGACAGAGATTCCAATTTTACATATGCCTCG
GATTGCGGTTGATAGTATTGGTCGTCACTTTTCGGATGCTAAGAGAGTCGCTGTTTTGGCAACAGAAGGAACGATTTTGA
CGGGAGTTTATCGCGAGGCCTTGGAAGAACAAGGTTATGAAGCGGTAATTCCAGATGAAGAGTTACAAGAAAAAGTTAAT
CGATTGATTTATCAAGAAGTCAAGGAAAATAGAAATCTCAACTTTGAACTTTATCATGAAATTTTATCTGATGTTGCTTC
TAAAATGAACTGTGAAGTAACGATATTAGGCTGCACAGAACTGTCAGTTTTGTATGATGCTTATGATTTAACAAAAGAAT
ATAATATAATTGATGCACAAGCTGAAACTGTACATCGAACTTTATCCATGATGGGAAAAAATGACCTACTAGATGACAAT
TAA

Upstream 100 bases:

>100_bases
CGTTACCTTTTGATGAAATATGCTTTTCATCGTTATATTGGGGCCTTTAAAACATATTTTCACAAATAAAAATTAAGAAT
AAGAAGGACAGGGGGATGTG

Downstream 100 bases:

>100_bases
AAAGAAAAAACTTTTTAAAAAAAATATCGTAATTTTATTCGTTCTTGTGGCTTTGTTAGTTCTTGTGACCTATTTGTTGA
ATCCGAAAAATCAAGAGGAC

Product: RacD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MENFFTILGGMGTLATESFIHTLNKRTEAHRDQDYLNYIVVNHATIPDRTEYIKNPSLENPEEKLIDDIKIHSQLSPKFF
VVPCNTAHYYFDEMQKATEIPILHMPRIAVDSIGRHFSDAKRVAVLATEGTILTGVYREALEEQGYEAVIPDEELQEKVN
RLIYQEVKENRNLNFELYHEILSDVASKMNCEVTILGCTELSVLYDAYDLTKEYNIIDAQAETVHRTLSMMGKNDLLDDN

Sequences:

>Translated_240_residues
MENFFTILGGMGTLATESFIHTLNKRTEAHRDQDYLNYIVVNHATIPDRTEYIKNPSLENPEEKLIDDIKIHSQLSPKFF
VVPCNTAHYYFDEMQKATEIPILHMPRIAVDSIGRHFSDAKRVAVLATEGTILTGVYREALEEQGYEAVIPDEELQEKVN
RLIYQEVKENRNLNFELYHEILSDVASKMNCEVTILGCTELSVLYDAYDLTKEYNIIDAQAETVHRTLSMMGKNDLLDDN
>Mature_240_residues
MENFFTILGGMGTLATESFIHTLNKRTEAHRDQDYLNYIVVNHATIPDRTEYIKNPSLENPEEKLIDDIKIHSQLSPKFF
VVPCNTAHYYFDEMQKATEIPILHMPRIAVDSIGRHFSDAKRVAVLATEGTILTGVYREALEEQGYEAVIPDEELQEKVN
RLIYQEVKENRNLNFELYHEILSDVASKMNCEVTILGCTELSVLYDAYDLTKEYNIIDAQAETVHRTLSMMGKNDLLDDN

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: =5.1.1.13 [H]

Molecular weight: Translated: 27579; Mature: 27579

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS00923 ASP_GLU_RACEMASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENFFTILGGMGTLATESFIHTLNKRTEAHRDQDYLNYIVVNHATIPDRTEYIKNPSLEN
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCCHHHHHCCCCCCC
PEEKLIDDIKIHSQLSPKFFVVPCNTAHYYFDEMQKATEIPILHMPRIAVDSIGRHFSDA
HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCC
KRVAVLATEGTILTGVYREALEEQGYEAVIPDEELQEKVNRLIYQEVKENRNLNFELYHE
CEEEEEEECCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ILSDVASKMNCEVTILGCTELSVLYDAYDLTKEYNIIDAQAETVHRTLSMMGKNDLLDDN
HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MENFFTILGGMGTLATESFIHTLNKRTEAHRDQDYLNYIVVNHATIPDRTEYIKNPSLEN
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCCHHHHHCCCCCCC
PEEKLIDDIKIHSQLSPKFFVVPCNTAHYYFDEMQKATEIPILHMPRIAVDSIGRHFSDA
HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCC
KRVAVLATEGTILTGVYREALEEQGYEAVIPDEELQEKVNRLIYQEVKENRNLNFELYHE
CEEEEEEECCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ILSDVASKMNCEVTILGCTELSVLYDAYDLTKEYNIIDAQAETVHRTLSMMGKNDLLDDN
HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2054383; 1907199 [H]