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The map label for this gene is yocH [H]

Identifier: 125624961

GI number: 125624961

Start: 2158249

End: 2159322

Strand: Reverse

Name: yocH [H]

Synonym: llmg_2194

Alternate gene names: 125624961

Gene position: 2159322-2158249 (Counterclockwise)

Preceding gene: 125624962

Following gene: 125624960

Centisome position: 85.37

GC content: 38.45

Gene sequence:

>1074_bases
ATGCTTTTATCAGTTCTACCCGTTAATCTCTTAGGAGTGATGAAAGTAGATGCTGACAGCTCTCAAACGGAAGTCAACCA
AGAAATACAAAACTTCCAAGCGCAGCTCGACAGTAAACTTGCACAGGCAAATAAGATTTATAGCCAAGCACAAGAAGCCC
AACAAAAAGTTAATCAGTCAAAGAGTAAGATTACTGAATTGGAAACAGGAATCTCTGAAACTGAAAATGACGTTGTTCAG
CTTAAAGCCTCTGTCGCGAAACAAATGCGAGCAATGCAAGCAAATGGTGGGGGAACTTTATCATATATTGATATCGTTGC
ATCATCAAAAAATCTTTCAGATATGATTATGCGTTTAACAAACTTGCATGTGGTATTAACTGCTGAATCCGACCAAGCGA
AATCTCTTATTGAAAAAGAAGAATCGCTAAAGACAATGAAAGTCAAATTGGAAGAATCTCAAGAAACTCTTGTGAAAAAT
CAAAATGACTATCAAGGACAAGTTGACGCTTTGCAAAGTAATATTTCTGGACTCAAAGATAAAATTAGTTCAAACAAACA
ACTTTTGAGTGAAATGCAAGCAAAAGCTGCGGCAGAACAAAAAGCTCGCGATGAAGCCTTGGCTAAATCAGTAGCAGACG
TGAAAGCAAAAGCGGCAGCGCAAGCTGCTACAAAAGCTGAACAAGAAAAAACAAAAGATTCTTCAAGTTCTGAAAGCAAT
AATTCAGTAAGCACTCAAACGCCTGCTGACACTAACAGTAATACAACAACTAACAATAACAACTCATCGTCAACGACTTC
TGGCGGACGCACATTAAACGTAGAAGCAACAGCTTACGCTTTAAATGGAATTACTGCAACTGGAATTGATTTAAGTAAAA
ATCCAATTTGTATCGCGGTTGATCCAAGTGTCATTCCTTTGAATTCGCTCGTTGAAGTTCCGGGGTATGGGATTGCAATT
GCTGGTGATACTGGGGGTGCAATTGTTGGAAACATCATTGACGTCCATTTTCCATCAAATGACCAAGCAATCGCTTGGGG
ACGTAAAAATATTCAAATCACTGTTTTGAGTTAA

Upstream 100 bases:

>100_bases
CAATTAAAAACTGTGGGGGATATGTTAGAATAGACAAAGTATGAAGAATTTAATTCCTAAAAAAATAAAACAAGTTGGAA
TACTTGTAGGAGCTTTACTG

Downstream 100 bases:

>100_bases
AAAAACTTTAAAAAATAATGAAAGGCTTACAGTTAAGCCTTTTTTTGGTATAATGAGAACATGATAAAAAATGGACGTAT
TGTCAAATCCTTGGCAGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MLLSVLPVNLLGVMKVDADSSQTEVNQEIQNFQAQLDSKLAQANKIYSQAQEAQQKVNQSKSKITELETGISETENDVVQ
LKASVAKQMRAMQANGGGTLSYIDIVASSKNLSDMIMRLTNLHVVLTAESDQAKSLIEKEESLKTMKVKLEESQETLVKN
QNDYQGQVDALQSNISGLKDKISSNKQLLSEMQAKAAAEQKARDEALAKSVADVKAKAAAQAATKAEQEKTKDSSSSESN
NSVSTQTPADTNSNTTTNNNNSSSTTSGGRTLNVEATAYALNGITATGIDLSKNPICIAVDPSVIPLNSLVEVPGYGIAI
AGDTGGAIVGNIIDVHFPSNDQAIAWGRKNIQITVLS

Sequences:

>Translated_357_residues
MLLSVLPVNLLGVMKVDADSSQTEVNQEIQNFQAQLDSKLAQANKIYSQAQEAQQKVNQSKSKITELETGISETENDVVQ
LKASVAKQMRAMQANGGGTLSYIDIVASSKNLSDMIMRLTNLHVVLTAESDQAKSLIEKEESLKTMKVKLEESQETLVKN
QNDYQGQVDALQSNISGLKDKISSNKQLLSEMQAKAAAEQKARDEALAKSVADVKAKAAAQAATKAEQEKTKDSSSSESN
NSVSTQTPADTNSNTTTNNNNSSSTTSGGRTLNVEATAYALNGITATGIDLSKNPICIAVDPSVIPLNSLVEVPGYGIAI
AGDTGGAIVGNIIDVHFPSNDQAIAWGRKNIQITVLS
>Mature_357_residues
MLLSVLPVNLLGVMKVDADSSQTEVNQEIQNFQAQLDSKLAQANKIYSQAQEAQQKVNQSKSKITELETGISETENDVVQ
LKASVAKQMRAMQANGGGTLSYIDIVASSKNLSDMIMRLTNLHVVLTAESDQAKSLIEKEESLKTMKVKLEESQETLVKN
QNDYQGQVDALQSNISGLKDKISSNKQLLSEMQAKAAAEQKARDEALAKSVADVKAKAAAQAATKAEQEKTKDSSSSESN
NSVSTQTPADTNSNTTTNNNNSSSTTSGGRTLNVEATAYALNGITATGIDLSKNPICIAVDPSVIPLNSLVEVPGYGIAI
AGDTGGAIVGNIIDVHFPSNDQAIAWGRKNIQITVLS

Specific function: Unknown

COG id: COG3883

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 37944; Mature: 37944

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSVLPVNLLGVMKVDADSSQTEVNQEIQNFQAQLDSKLAQANKIYSQAQEAQQKVNQS
CEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSKITELETGISETENDVVQLKASVAKQMRAMQANGGGTLSYIDIVASSKNLSDMIMRLT
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHH
NLHVVLTAESDQAKSLIEKEESLKTMKVKLEESQETLVKNQNDYQGQVDALQSNISGLKD
CEEEEEEECCHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
KISSNKQLLSEMQAKAAAEQKARDEALAKSVADVKAKAAAQAATKAEQEKTKDSSSSESN
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NSVSTQTPADTNSNTTTNNNNSSSTTSGGRTLNVEATAYALNGITATGIDLSKNPICIAV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEE
DPSVIPLNSLVEVPGYGIAIAGDTGGAIVGNIIDVHFPSNDQAIAWGRKNIQITVLS
CCCEECHHHHHCCCCCEEEEECCCCCEEEECEEEEEECCCCCEEEECCCEEEEEEEC
>Mature Secondary Structure
MLLSVLPVNLLGVMKVDADSSQTEVNQEIQNFQAQLDSKLAQANKIYSQAQEAQQKVNQS
CEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSKITELETGISETENDVVQLKASVAKQMRAMQANGGGTLSYIDIVASSKNLSDMIMRLT
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHH
NLHVVLTAESDQAKSLIEKEESLKTMKVKLEESQETLVKNQNDYQGQVDALQSNISGLKD
CEEEEEEECCHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
KISSNKQLLSEMQAKAAAEQKARDEALAKSVADVKAKAAAQAATKAEQEKTKDSSSSESN
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NSVSTQTPADTNSNTTTNNNNSSSTTSGGRTLNVEATAYALNGITATGIDLSKNPICIAV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEE
DPSVIPLNSLVEVPGYGIAIAGDTGGAIVGNIIDVHFPSNDQAIAWGRKNIQITVLS
CCCEECHHHHHCCCCCEEEEECCCCCEEEECEEEEEECCCCCEEEECCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]